| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_13241 |
|---|
| Symbol | psbD |
|---|
| ID | 4718844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9515 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008817 |
|---|
| Strand | + |
|---|
| Start bp | 1162181 |
|---|
| End bp | 1163257 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640081008 |
|---|
| Product | photosystem II PsbD protein (D2) |
|---|
| Protein accession | YP_001011638 |
|---|
| Protein GI | 123966557 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01152] Photosystem II, DII subunit (also called Q(A)) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0553037 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCG CCGTTGGAAG CGCACCACAA AGAGGATGGT TTGATGTCCT TGATGATTGG
TTAAAGCGCG ACCGGTTTGT ATTTATTGGT TGGTCCGGAC TTCTTCTTTT ACCTTGTGCA
TATCTTGCAA TAGGTGGATG GTTTGTCGGA ACAACATTTG TCACCTCTTG GTACACACAT
GGAGTTGCAA GCTCCTACCT TGAAGGTTGT AACTTTTTAA CAGCAGCTGT AAGTACCCCT
GGAGATGCCA TGGGACACAG TCTTCTGTTT TTATGGGGCC CTGAAGCCCA AGGAAGTTTC
GTAAGATGGC TACAACTTGG TGGTCTTTGG AACTTTGTTG CATTACATGG AGTATTTGGC
CTTATAGGCT TTATGCTTCG TCAATTTGAA ATTGCCGGTC TTGTAGGAAT TAGACCTTAT
AACGCCTTAG CTTTTTCAGC TGTAATTGCA GTATTTACAA GTATTTTCCT TATCTATCCT
TTAGGACAGC ATAGTTGGTT CTTCGCTCCT TCATTTGGAG TCGCAGCAAT CTTCAGATAT
ATTCTGTTCA TTCAAGGTTT TCATAATATT ACTTTAAACC CATTTCACAT GATGGGTGTT
GCTGGAATCC TAGGAGGAGC ACTTCTTTGT GCTATTCATG GAGCTACAGT ACAAAATACA
TTGTATGAAG ATACAAGTAT TTACACAGAT GGTAAGGTTC AAAGTTCAAC TTTTAGAGCT
TTCGATCCTA CTCAGGAAGA AGAAACCTAT TCAATGATTA CAGCGAATAG ATTTTGGAGC
CAAATTTTTG GTATTGCTTT TTCTAACAAG CGTTTCCTTC ACTTCTTGAT GTTATTCGTA
CCTGTAATGG GTATGTGGAC ATCTTCAATA GGTATTGTTG GTTTAGCACT TAACTTGAGA
GCTTATGATT TCGTAAGTCA AGAGATACGT GCTGCAGAAG ATCCTGAATT TGAAACTTTC
TACACAAAGA ATATACTTTT GAACGAAGGT ATGCGAGCAT GGATGTCTTC TGTGGATCAA
CCACACGAAA ATTTTGTATT CCCTGAGGAG GTTCTTCCAC GTGGAAACGC CCTTTAA
|
|---|
| Protein sequence | MTIAVGSAPQ RGWFDVLDDW LKRDRFVFIG WSGLLLLPCA YLAIGGWFVG TTFVTSWYTH
GVASSYLEGC NFLTAAVSTP GDAMGHSLLF LWGPEAQGSF VRWLQLGGLW NFVALHGVFG
LIGFMLRQFE IAGLVGIRPY NALAFSAVIA VFTSIFLIYP LGQHSWFFAP SFGVAAIFRY
ILFIQGFHNI TLNPFHMMGV AGILGGALLC AIHGATVQNT LYEDTSIYTD GKVQSSTFRA
FDPTQEEETY SMITANRFWS QIFGIAFSNK RFLHFLMLFV PVMGMWTSSI GIVGLALNLR
AYDFVSQEIR AAEDPEFETF YTKNILLNEG MRAWMSSVDQ PHENFVFPEE VLPRGNAL
|
|---|
| |