| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_11921 |
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| Symbol | srmB |
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| ID | 4718955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9515 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008817 |
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| Strand | - |
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| Start bp | 1047510 |
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| End bp | 1049297 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 640080874 |
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| Product | putative ATP-dependent RNA helicase |
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| Protein accession | YP_001011506 |
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| Protein GI | 123966425 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.412089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATCAA ATAAACAAAA ACAATTGGAA GAGAAAGATG AAGATAATTT TGGGGAAGAA
ACTAGTTCTA AACACGATTC AAAAGAAATA GAAAATAATT TGAAAATTAT TTCTGAAGAT
AAACTTTCTG CCGAGAAGGA AGATATTGAA AAAGGGTTTG CTTGCTTTGG GTTTAATAAA
TTAATATTAA ATTCATTGGA AAATAAAGGA TATAAAATTC CTACACCTAT ACAAAAAGCC
GCAATTCCAG AATTAATGCT TGGTAGAGAT TTGTTAGGTC AAGCTCAAAC TGGTACAGGG
AAAACGGCAG CCTTCGCTCT CCCAATAATA GAAAAGCTTG AAAATAACAA AGAATCAAAC
GCTAAAGTTT TGGTGATGAC CCCAACAAGG GAGTTGGCTA CTCAAGTAGC AGATTCTTTC
AAGAGTTATA GTGTTGAATC AACCAATTTA AGGACTTTAG CAATATATGG AGGGACTGAT
TTTAGGAATC AAATCTCATC ACTTAAGAGG AAGACAGACG TTGTTGTTGG TACACCTGGA
AGAATAATGG ACCATATTAG ACAAGGCACA TTCAAAATTA ATAATATAAA TTGTCTAGTC
CTTGATGAAG CTGACGAAAT GTTGAAAATG GGATTTCTTG AAGATATTGA ATGGATAATA
GATAAACTTC CAGAAAACAA ACAAATGGTA TTGTTCTCTG CAACAATGCC AAATGAGATA
AGAAACATAG CAAAAAAATA TCTTAATGAT CCAGCTGAGA TACTTATTAA AAGCGTAAAG
AAAGAAACTC AATTAATTAC CCAAAGATAT ATTAATGTTC AAAGACACCA TAAGTTAGAA
GCTCTAAAAA GAATATTAGA AATTACTAAT GAAGGAGTAA TAATATTTGT GAGGACAAAA
TTACTTACTA CTTCTATAGC TGAAGCATTG GAAAATTCAG GCCATAGTGT GGCTGTACTT
AACGGTGATA TTCCACAGAA TCAAAGAGAA AATACAGTTG ATAGATTAAA AAAAGGATTT
ATTGATATTC TTGTAGCCAC TGATGTGGCA GCGAGAGGAC TAGATGTTGA AAGGATTAAA
CTTGTTATAA ACTACGATTT CCCTTTCGAT AAGGAAACAT ATACTCATAG AATTGGAAGA
ACAGGGAGAG CTGGTAGATC TGGAGAAGCA ATCTTATTTG TTAATCAAAG AGAAAAACAT
TTTCTAAGGA ACTTGGAAAA CTCTACAAGA AATAAGATAG AAGAAATTGA GATACCGAAT
AATAAATTAA TTAACGAAAA AAGGATGGGG AAATTAATTT CAAATTTAAA TGAAATTTCA
CTTGCTCAAG AAAATAACGA AGAAAAAAAA GCTTTGATGA TCGATATTCT TGACATCTTA
AGAGAAAAAT ATTCTATGAA TGAATCAAAC ATTGCAATGG CAGCTATTAA TTTAGCAATA
GGAAATAAAT CCTTTTTTCT AAATGAAGAT GAATCTTGGA TTTATAAACA AAATAATTCT
GATCGTAATA GATCTAATAG AAATGGAAGT GGAAATAATC GGATGAGAAA TATAAATAGA
AGGAATAATT ATCAAAATGA TTCTTTTGAA ACCTATAAAT TTAATTTCGG CAAAATGGAT
AGAGTTAGAG TATCAAATAT AATTTCTTCT ATATGTAACT CTACAAATAT TAATGGTAGA
TCTATAGGCA AGATACAAAT ATTTAATGAA TATAGTTTGG TTGATTTACC AAAAGATTTG
CATGGTGAAG TTAGGAATAA ATTGAGAAAA TTAAGAATCA GAAATTAA
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| Protein sequence | MASNKQKQLE EKDEDNFGEE TSSKHDSKEI ENNLKIISED KLSAEKEDIE KGFACFGFNK
LILNSLENKG YKIPTPIQKA AIPELMLGRD LLGQAQTGTG KTAAFALPII EKLENNKESN
AKVLVMTPTR ELATQVADSF KSYSVESTNL RTLAIYGGTD FRNQISSLKR KTDVVVGTPG
RIMDHIRQGT FKINNINCLV LDEADEMLKM GFLEDIEWII DKLPENKQMV LFSATMPNEI
RNIAKKYLND PAEILIKSVK KETQLITQRY INVQRHHKLE ALKRILEITN EGVIIFVRTK
LLTTSIAEAL ENSGHSVAVL NGDIPQNQRE NTVDRLKKGF IDILVATDVA ARGLDVERIK
LVINYDFPFD KETYTHRIGR TGRAGRSGEA ILFVNQREKH FLRNLENSTR NKIEEIEIPN
NKLINEKRMG KLISNLNEIS LAQENNEEKK ALMIDILDIL REKYSMNESN IAMAAINLAI
GNKSFFLNED ESWIYKQNNS DRNRSNRNGS GNNRMRNINR RNNYQNDSFE TYKFNFGKMD
RVRVSNIISS ICNSTNINGR SIGKIQIFNE YSLVDLPKDL HGEVRNKLRK LRIRN
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