| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_11401 |
|---|
| Symbol | ddpA |
|---|
| ID | 4719033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9515 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008817 |
|---|
| Strand | - |
|---|
| Start bp | 993062 |
|---|
| End bp | 994633 |
|---|
| Gene Length | 1572 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 640080821 |
|---|
| Product | ABC transporter substrate-binding protein |
|---|
| Protein accession | YP_001011454 |
|---|
| Protein GI | 123966373 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATA ATTTTTTAGT AACCACTTTC CTTTTCTTTA TTTCCTTATC ACAGTTTTCT
TGCGTTCCAG ATAGTAGACC CAAAAGAATT ACAATTGCGA GTTCAGGAAA AATAGAGTCT
TTAGATCCTG CAAGGGCTAG TACTCTTAAG TCAATTCAAC TATTAAGTTC TCTTGGAGAT
ACTTTATATG AATTAAATTC TAAGGGAGAA TTAATCCCTG AATTAGCATC AGGAATGCCA
ATTTTTTCAA AAGATAAATT AAAAATAACA ATTAATCTTA GAAGAAATGT TCTTTTTCAT
GATGGAACTT TATTTAATTC AAATGCTCTA AAATTTTCTT TTGACAGATT TAAAAGAATT
GGAACAATGA ATTATATTTT GGGGAATAAA ATACAATCAA TAGAAACACC AAGCGAATAC
AAGGTTGTCA TTAATTTAAC CAAACCATCT AGTTCTATTA ATGGATTACT TACAGCTGTA
TATTTAACAC CTATTTCCCC GACTTTTTAT AAGGATTATT CTGATAAATT TTTAAATGAT
CAATTTGTTG GAACTGGTAA ATATATACTT AAGAGATTTT CAAATGAAGT TCAAATAATT
GATCCAAATT TAAATCATTG GGGTAATAAA CCTAATAATG AGGGTGTGAA TTTTATAGGA
TATTCCAATT CTTCTTCTCT TTTCGGAGCT TTAAAAAGTA AACAAATTGA TGTTCTATTA
TCAAATTCAA TTGATGATAG TCAAAGAAAT AATTTAAATT CTTTAAGCAA AAAGAATGAA
ATTAAAGAAG GAAATAGTCC TGCTACAGAA ATAAGCTTCA TTAGTCTTAG AACAAATTCT
TATCCGTTAA ATAACCTTAA TGTAAGGTTA GCGATTGCTA AAAGTCTAAA TAGAAAATTA
ATTAGCGATA AAGTTAGTTA TGGTTTGAGG GAACCATTAA GATCGATTGT TCCTCCCATT
TTAAAAAAAA ATAAGCAGGA ATTATGGCCA GAATATAATC CTGTAGAAGC GAAAAATTTA
TTACAAAAAG AAGGTTTCTG TAATGGAAAC ATTTTAGAAT TACCTCTTAC TTTCCGATCT
AATGTGCCTG CTGATAGACT TATTGCTCTT TCTTGGCAAG AGGAAATCAA AAATATATTG
AATGAATGTA TTAGTATCCA ACTAAACGGG GTAGAGTCAA CAACAATTTA TAAAAATCTT
AATCTAGGTC TTTACACAGC GGTCATTCTT GATTGGACAG GAGCTTATTC TGATCCTGAG
GCATACCTTA CACCTCTTCT AAGTTGTAGT GAGTTAGATG GTGAAAAATG TAAAAAAGGA
GAATCAGTTT ATAGCGGAAG TTTTTGGGGA TCGAGGATTG TAGATGATTT ATTTCTTGAG
AGTGAAAAAT TAAATGGAGA TGAAAGATTA GCCAAGTTAA TTGAAATAGA GAAAATAGCT
TCAGAATCAA TACCTTATAT TCCTATATGG ATTTCATCTC AAAAAGCTTG GTCTCAAAAT
AAAGTATCAA AACCTATTTT TAATGGGGCA GGAATTATTT CAATTAGCGA TCTTAAATTT
ATTAATGAGT AG
|
|---|
| Protein sequence | MQNNFLVTTF LFFISLSQFS CVPDSRPKRI TIASSGKIES LDPARASTLK SIQLLSSLGD
TLYELNSKGE LIPELASGMP IFSKDKLKIT INLRRNVLFH DGTLFNSNAL KFSFDRFKRI
GTMNYILGNK IQSIETPSEY KVVINLTKPS SSINGLLTAV YLTPISPTFY KDYSDKFLND
QFVGTGKYIL KRFSNEVQII DPNLNHWGNK PNNEGVNFIG YSNSSSLFGA LKSKQIDVLL
SNSIDDSQRN NLNSLSKKNE IKEGNSPATE ISFISLRTNS YPLNNLNVRL AIAKSLNRKL
ISDKVSYGLR EPLRSIVPPI LKKNKQELWP EYNPVEAKNL LQKEGFCNGN ILELPLTFRS
NVPADRLIAL SWQEEIKNIL NECISIQLNG VESTTIYKNL NLGLYTAVIL DWTGAYSDPE
AYLTPLLSCS ELDGEKCKKG ESVYSGSFWG SRIVDDLFLE SEKLNGDERL AKLIEIEKIA
SESIPYIPIW ISSQKAWSQN KVSKPIFNGA GIISISDLKF INE
|
|---|
| |