| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_10121 |
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| Symbol | secD |
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| ID | 4719160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9515 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008817 |
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| Strand | - |
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| Start bp | 905383 |
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| End bp | 906843 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 640080692 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001011326 |
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| Protein GI | 123966245 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA GGCAAGGTTG GTTTTTTTTT ATTATTTTCT TACTGACTTT ATCTATTTAT
TTATTAATTA ATTTCCCATT ACAATTAGGT CTAGATTTAA AAGGAGGTTC TCAACTAACT
CTTCAATTAG TTAAAGAGGA TGGGAAAGTT ACAAAAGAAG AGTTAGAGGC TGTCAATGCA
GTTTTAGATA AACGTGTAAA TAATTTAGGA GTGGCAGAGT CTAATTTACA AACCTTAGGA
CGAGATCAAT TAATTTTAGA GTTACCAGGA GAGCAAAACC CTTTATCAGC TTCAAGGATA
TTAGGTAAAA CTGCTTTATT AGAATTTAGA ACTCAAAAAG AAAACACAAT ATCTGAACTA
AATAATCTTC AAATACAGAG GATAAAAATA AACGATTTGA TCGATCAATT CAATATTGAT
AATAAAAGAA ATGTAGATAT TTCTTTAAAC TTTTATGATA ATCTAACTGA ATTAGAAAAG
GATATTAATT ATTCTTCTAA AAATCAGCAA TTATTTGATA GATTGGTCGA TACTAAAAAA
TTTATAAGTA ATGAAATTGT AAATCTGTTC AACAAAACAG ATTTATCAGG AAAAGATTTA
GTAAATGCTG GTAGAAGGCA AGAGCAAACT AATAACAATT GGGAGGTTTT ATTATCCTTT
AGTAGTGAAG GTGGTGACAA ATTTGCGGAA ATTACTAAAT CGATAGCAGG TACTGATCAA
CTTTTGTCAA TTGTTCTTGA TGGGGAATCT ATCAGCGAAG CTAGTGTGGG AAGTCAATTT
ATAAATACTG GCATCACGGG TGGGTCAGCA ACTATAAGTG GAAATTTTTC AGCTGAGAAC
GCCAGAGAAC TAGAAGTTCA ACTCAAAGGT GGTTCTTTGC CTTTACCTAT TGAAATTGTT
GAAACTAATA CAATAGGTCC TTTACTTGGA TCGAAAAATA TTTTGAAGAG TCTTTATGCC
GCTATTTGTG GATTGATGTT TGTTGGAATA TTTATGATTT TTAATTATAG AATTCTTGGA
TTTGTTTCTG TAATTTCGTT AATTTTTTAC GGGTTTTTCA ACTTAGCTCT TTATTCTTTA
ATCCCCGTGA CTTTAACATT ACCAGGAATT GCTGGATTAA TTTTAAGTAT TGGTATGGCC
GTAGATGCAA ATGTTTTAAT TTTTGAAAGG ATTAGAGAAG AACTTTTAAA TGGTAATACT
CTTATAAGAT CAATTGATAG TGGATTCCTA AGAGCTAATT CATCCATTAT CGATGGTCAT
ATTACAACCC TTGTAAGTTG TTTAGTTTTG TTTTTCTTAG GAACTAATTT TGTAAAAGGA
TTTGCTGCAA CACTTGGCAT TGGTGTTGTG ATAAGTTTAT TTACCTCATT AAATTGCTCC
AAAACAATTT TAAGATTTTT GACTACTTAT CAATCTTTAA GACAAAAAAA TCTGTATTTA
AATAGGTCTA ATCCCCTCTA A
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| Protein sequence | MKKRQGWFFF IIFLLTLSIY LLINFPLQLG LDLKGGSQLT LQLVKEDGKV TKEELEAVNA
VLDKRVNNLG VAESNLQTLG RDQLILELPG EQNPLSASRI LGKTALLEFR TQKENTISEL
NNLQIQRIKI NDLIDQFNID NKRNVDISLN FYDNLTELEK DINYSSKNQQ LFDRLVDTKK
FISNEIVNLF NKTDLSGKDL VNAGRRQEQT NNNWEVLLSF SSEGGDKFAE ITKSIAGTDQ
LLSIVLDGES ISEASVGSQF INTGITGGSA TISGNFSAEN ARELEVQLKG GSLPLPIEIV
ETNTIGPLLG SKNILKSLYA AICGLMFVGI FMIFNYRILG FVSVISLIFY GFFNLALYSL
IPVTLTLPGI AGLILSIGMA VDANVLIFER IREELLNGNT LIRSIDSGFL RANSSIIDGH
ITTLVSCLVL FFLGTNFVKG FAATLGIGVV ISLFTSLNCS KTILRFLTTY QSLRQKNLYL
NRSNPL
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