| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_04981 |
|---|
| Symbol | topA |
|---|
| ID | 4720011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9515 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008817 |
|---|
| Strand | + |
|---|
| Start bp | 445118 |
|---|
| End bp | 447730 |
|---|
| Gene Length | 2613 bp |
|---|
| Protein Length | 870 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640080173 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_001010814 |
|---|
| Protein GI | 123965733 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.225706 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATCACA CACTTGTTAT TGTTGAAAGT CCCACAAAGG CAAAAACTAT AAGAAGGTTT
TTGCCTCCTA ATTATGAAGT TTTAGCTTCT ATGGGGCATG TAAGAGATCT TCCAAAAGGA
GCTGCTGAAA TCCCTGCATC AGTAAAAAAA GAAAAATGGT CAAGAATAGG TGTAAACACT
ACAGAAGATT TTGAACCACT TTATATCGTT CCTAAAGAAA AAAAGAAAGT TGTTAAAGAT
TTAAAAAATG CCTTAAAAGA TGCTACCCAA TTACTATTAG CAACTGATGA AGATAGGGAG
GGAGAGAGTA TAAGTTGGCA CTTAATGCAA ATACTTAAAC CCAAGATTCC AACTAAACGG
ATGGTTTTTC ATGAAATTAC TAAAAAGGCT ATTAATAAGG CTCTAGATGA AACTAGAGAA
ATTGATATGG AATTAGTTCA GGCCCAAGAA ACAAGAAGAA TTCTTGACAG GCTTTTTGGA
TATGAACTTT CCCCATTACT TTGGAAAAAG GTAGCCCCTA GGCTTTCTGC AGGTCGTGTT
CAGTCTGTAT CTGTAAGATT GCTTGTTAAT AAAGAAAGAG AAAGGAGAGC TTTTAAAAAA
GCTACTTATT GGGGATTAAA AGCCACTTTA CTTAAGGATA ATGTTTTTTT TGACAGTAAG
TTATCTAGCC TATCTGGTCA GAAAATCTCT AACGGATCTG ATTTTGATGA GAAAACCGGT
AAATTAAAAA ATGGTAATAA ATCTTTAATT TTGAACGAAG AGAGAGCGAA GAGTTTGCTC
AAGTCTTTAT CTGAAGAAAA GTGGAGAGTT ATAAAAATAG AGAAAAAACC AACAACTAGG
AAGCCTGTTC CACCATTTAC TACTAGTACC TTGCAGCAGG AGGCTAATCG AAAACTTCGA
TTATCAGCAA GAGAAACAAT GAGATGTGCA CAAGGCTTGT ATGAGAGAGG TTTTATTACA
TATATGAGAA CTGATTCGGT ACATCTCTCA GAACAAGCAA TAAGAGCGGC GAGAGAATGT
GTGCAGTCAA GATACGGAAA AGAATATTTA TCAAGTTCAG TTCGTCAATT TAATTCAAAA
GAAAGGAATG CTCAAGAAGC TCATGAAGCT ATTAGACCTG CCGGAGAAGT ATTTAAAACA
CCCAGCGATA CAGACTTGGC GGGAAGGGAT CTTTCCCTAT ATGAATTAAT TTGGAAAAGA
ACTGTTGCCA GTCAAATGGC TGAAGCAAGA TTAACTATGG TTAATGCTGA AATAGAAGTG
GGAGAAGGAT TATTTAAGTC CAGTGGAAAA AGTATTGATT TTGCAGGATT TTTTAGAGCT
TACGTCGAAG GTAGTGATGA TCCAAGTGCA TCATTGGAAC AGCAAGAAGT AATTCTCCCA
AATTTAACTC TTGGGTCTAC TCTTGAGGTG GCCAGTAAAG AGGCTACTTA TCATGAGACT
AAATCTCCAG CCAGATATAC TGAGGCTGCA TTAGTTAAAG TTCTAGAAAA AGAGGGCATA
GGCAGACCTT CTACTTATGC AAGTATTATT GGAACAATAG TTGATAGGGG TTATGCAAAT
ATTTCTTCAA ACTCTTTATC TCCTACCTTT ACTGCTTTTG CTGTTACGGC ATTACTAGAG
GAGCACTTCC CTGATCTAGT AGATACTACT TTTACGGCAA AAATGGAATC TTCATTAGAT
GAAATTTCTT CAGGTAATCT AGAATGGCTA CCATATTTAG AAACTTTTTA TAAAGGTAAA
AACGGTCTTG AGGTGAAAGT TCAGAAAACA GAAGGTGATA TTGATGGGAA AGCATATAGA
CAAGTTGATT TTGATGATCT CCCTTGTGTA GTTAGAATCG GATCAAACGG GCCATGGCTA
GAGGGAGTAA AAATAGATGA ATCAGGAAAT GAAATACAAG CAAAAGGAAA TCTCCCTATG
GATATTACTC CTGGAGATTT AGATAAAAAG AAAGTTGATC AAATACTAAG TGGCCCCTCA
GATCTTGGGA CTGATCCAAA AACAGGTGAG CAAGTATTTT TGAGATTTGG TCCTTATGGA
CCTTATGTTC AGCTAGGTAA TATTGAAGAG GGTAAAGCCA AGCCAAGAAG GGCTAGTTTA
CCCAAAGACT TGAAAACTGA TGACTTGTCA TTATCGGAAG CTCTAGAACT ATTAAGCTTA
CCAAAATTGC TTGGAGAGCA TCCCGAGGGT GGAATTGTTG AGGCTGACAG AGGAAGATTT
GGTCCTTATA TTAAATGGAT CAAAGATGAA GATACTTCTG AAAATAGATC TTTAAAAAAA
GAAGATGATG TATTTAAGGT TGATCTTAAG CGTGCATTAG AAATCCTCGC GATGCCAAAA
TTAGGGAGAG GGGGACAAGA AGTAATAAAG GATTTTGGGA AACCTAAAGA GTTAAATGAT
AAAGTTCAAG TTTTAAATGG AAAATATGGA ATATATGTGA AGTGTGGGAA AATAAATGTT
TCTCTGCCTA AAGATACTGA TTTAGAAAAA TTTACAATTG AAAATGCCTT GATTCTTTTA
GAAGAGAAAA TGAAAGATAA AAAGGTTTCT GTTTTCAAAA AAAATAAAGT AATTAGTAAA
AAGACCAAAA AAAATAAAAA AATTAAAAAA TAA
|
|---|
| Protein sequence | MDHTLVIVES PTKAKTIRRF LPPNYEVLAS MGHVRDLPKG AAEIPASVKK EKWSRIGVNT
TEDFEPLYIV PKEKKKVVKD LKNALKDATQ LLLATDEDRE GESISWHLMQ ILKPKIPTKR
MVFHEITKKA INKALDETRE IDMELVQAQE TRRILDRLFG YELSPLLWKK VAPRLSAGRV
QSVSVRLLVN KERERRAFKK ATYWGLKATL LKDNVFFDSK LSSLSGQKIS NGSDFDEKTG
KLKNGNKSLI LNEERAKSLL KSLSEEKWRV IKIEKKPTTR KPVPPFTTST LQQEANRKLR
LSARETMRCA QGLYERGFIT YMRTDSVHLS EQAIRAAREC VQSRYGKEYL SSSVRQFNSK
ERNAQEAHEA IRPAGEVFKT PSDTDLAGRD LSLYELIWKR TVASQMAEAR LTMVNAEIEV
GEGLFKSSGK SIDFAGFFRA YVEGSDDPSA SLEQQEVILP NLTLGSTLEV ASKEATYHET
KSPARYTEAA LVKVLEKEGI GRPSTYASII GTIVDRGYAN ISSNSLSPTF TAFAVTALLE
EHFPDLVDTT FTAKMESSLD EISSGNLEWL PYLETFYKGK NGLEVKVQKT EGDIDGKAYR
QVDFDDLPCV VRIGSNGPWL EGVKIDESGN EIQAKGNLPM DITPGDLDKK KVDQILSGPS
DLGTDPKTGE QVFLRFGPYG PYVQLGNIEE GKAKPRRASL PKDLKTDDLS LSEALELLSL
PKLLGEHPEG GIVEADRGRF GPYIKWIKDE DTSENRSLKK EDDVFKVDLK RALEILAMPK
LGRGGQEVIK DFGKPKELND KVQVLNGKYG IYVKCGKINV SLPKDTDLEK FTIENALILL
EEKMKDKKVS VFKKNKVISK KTKKNKKIKK
|
|---|
| |