| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A9601_14791 |
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| Symbol | trmD |
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| ID | 4718200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. AS9601 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008816 |
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| Strand | - |
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| Start bp | 1259819 |
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| End bp | 1261045 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 640079200 |
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| Product | putative bifunctional enzyme: tRNA methyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_001009869 |
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| Protein GI | 123969011 |
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| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase
[TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGGTT TTAATTTTGA TGTAATTACA TTGTTCCCTA AAGCTTTTGA ATTAATAAAT
AATTTAGGGG TCATAACAAG AGCTCTAGAT AAGAAGTTAA TCGATGTAAA TTTACATGAT
TTAAGAGAAT ATGGAGAAGG TTCTTACAGA CAAGTAGACG ATAAGCCTTA TGGAGGAGGA
GCAGGTATGG TATTAAAACC TGAACCTATT TATAAGGCAT ATGAATCAAT TAGAAAATCA
TCTAAAAGTA AAACTTTGTT GATGACCCCT CAGGGTAAAA TTTTAAAGCA GAAGGATCTT
GCGAGATGGT CCACTTTGGA TCAAATAATA ATTATTTGTG GTCAATATGA AGGTTTTGAT
GAAAGGATTA GATGTTTAGC TGATGAAGAG ATATCGTTAG GAGATTATGT CCTTTCTGGA
GGAGAAATAC CCGCTATATC AATAATTAAT GGTTTGACTA GGTTATTACC AGGGACTCTT
GGTGATCCAG ACTCCTTAAT CGATGAGAGT CATAATTCTC CTTTATTAGA ATATCCTCAA
TACACAAGGC CTTTAACTTT TAAAGATATG AAAGTGCCAG ATATTTTAGT GAGCGGTAAT
CATGAAGAGA TTAAATCGTG GAGAAGAAAA AAAAGTTTCG AAAGAACATT GGAGAGAAGA
AGTGACTTAA TTTCAAATGA AAACTACAAA AAATCCCCAC AAAGTAAGAG AATAATAAAA
GAAAATAATC AATTCATGAA ATTTAGAATA GGTAATGGAT ACGATATTCA CAGACTAGTA
GAGGATAGAG ATTTAATTAT TGGAGGTGTA AAATTGAATC ATCCTGAAAA TTTAGGATTG
GATGGTCATA GTGATGCTGA TGTTTTAAGT CACTCAATAA TGGATGCATT ATTAGGAGCG
CTTTCGTTGG GCGACATAGG AAAGTATTTC CCCCCATCTG ATGAAAAATG GAAAAATGCT
GATAGCTTGT TTTTGTTGTC AAAAGTAATT GACTTGATAA GACAAGATGG TTGGGAAATA
AATAATATTG ATAGTGTTCT AGTTGCTGAA AGGCCAAAAA TCATGCCACA TGTAAAACTA
ATGAAAAAAA ACATTTCTGA AATTTTAAAT ATTGATGAAA ATTTAATTGG CATTAAAGCA
ACCACTAATG AAAAATTGGG TCCAGAAGGT AGAGAAGAGG GTATAAGTTG CCATTCAGTA
GTTCTTCTTG AGAAAAATGA GTTTTAA
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| Protein sequence | MSGFNFDVIT LFPKAFELIN NLGVITRALD KKLIDVNLHD LREYGEGSYR QVDDKPYGGG
AGMVLKPEPI YKAYESIRKS SKSKTLLMTP QGKILKQKDL ARWSTLDQII IICGQYEGFD
ERIRCLADEE ISLGDYVLSG GEIPAISIIN GLTRLLPGTL GDPDSLIDES HNSPLLEYPQ
YTRPLTFKDM KVPDILVSGN HEEIKSWRRK KSFERTLERR SDLISNENYK KSPQSKRIIK
ENNQFMKFRI GNGYDIHRLV EDRDLIIGGV KLNHPENLGL DGHSDADVLS HSIMDALLGA
LSLGDIGKYF PPSDEKWKNA DSLFLLSKVI DLIRQDGWEI NNIDSVLVAE RPKIMPHVKL
MKKNISEILN IDENLIGIKA TTNEKLGPEG REEGISCHSV VLLEKNEF
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