| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A9601_10301 |
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| Symbol | mfd |
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| ID | 4717741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. AS9601 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008816 |
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| Strand | + |
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| Start bp | 890248 |
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| End bp | 893760 |
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| Gene Length | 3513 bp |
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| Protein Length | 1170 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 640078745 |
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| Product | transcriptional-repair coupling factor |
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| Protein accession | YP_001009421 |
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| Protein GI | 123968563 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTAA ATACTTTAGT TGATTATATT TCGAACTCAC AAATTACTTC TGAATTAGTA
AAAAGAATTT CAAAAAATAA TGAATTAAAT ATTGTTGGTT CAAGTAGATA TGCTAAATCA
ATAATCTTAG ATAGCATCGC AAAAAAAGAG AAAAAAAATA TATTATTAAT TTGTCCTAAT
GTAGAAATTG CCTACAAATG GATTGGTTAT TTTGAAAGTA TAAATGATAA AGCAGTTTTA
TATTATCCTC CAAAAGAACA TCTACCATAC TCATCAATTA ATAAATCCAA AGAGATTGAA
TTTAGTCAGC TTACTGTTTT ATCCAAATTA ATAAAAAAAG AGAAAAATGA ACTTAATATT
GTTATATCAA CAGAGAGATC ACTACAACCT CATCTAATAA ATAAAAACTT ATTAATTGAA
AATAAGTTGA ATTTACAAAA AGGGGTTCAA ATCGAGATTC AAGAATTAGC AAATAAACTT
TCTTTACTTG GTTATACGAA GGATAATGTA ACTTCAACAG AGGGATTCTG GAGTAGGAGA
GGGGAAATAA TAGATATTTA TCCCGTCAAT AATGAGTTTC CTATAAGATT AGAATTTTTT
GATAATGTAA TTGAGAAGAT AAGAGAATAT GATCCCCATA CACAAAAAAC ATTAGAAAGT
ATTAATAATA TTGAAATAAT ACAGGCTGGA TTTAATTTGC TAATTAAAGA TAAGTTAAAT
AATTTTTCTA AGAACGGTAT TTTTAATTCA GAAGATATAA ATAAAAATAA TCTTGATCGG
TATTTAGGAA TAATTGAAAA AACCCCCTCA AATATAATAG ATTTTATTGA TAGGGAAACA
ATTCTCGTAA TTGATGAATT AGAAGATTGT ACTAAATTTG CAAATAATTG GTATCAAGAT
TCAGAAAGTA ATTTTGATAA TTGTGAGTAT GAATTAAATG AGAACCTTAA AAATAATGAT
ATTAATTTAC AGGCCAAACC TAATTTACAT TTAAAGTTTG ACGAAATATT AAATTCACTA
GGAAATTTTA ATTTGATAAA ATTTTATGAA TTTGAATCTA AAACCAATAT TGATAATAAG
TTTTTGTTAA ATGATAAAAG AATAAATTCA TACTCTAAAA ATATAGGAAA ATTATCCAAT
GATATAAATA AAAATATAAA AAATAATGAG AAAGTATGGA TATTATCAGC ACAGCCATTG
AGGACTAGGA CTTTACTTTT TGAGCACGAA TGTAATACAA ATTTCTTAAA CAATCCTAAT
GATATTGATG AAGCATTTAA GTCAATTAAT AATTCAACTC CTTTAATTTT AAAAAATAAG
AACAATTATG AAATCGAGGG TTTTTATCTT CCAATTTGGA AAGTTGTCCT AATAACAGAT
AAAGAATTAT TTTCACAACA ATCTCTTTTT CATAATGTAT TCATAAGAAG AAAAAAAAGA
AGTGTAAATT CAAATATAAA CGTAAACAAG ATTAGTCCCG GTGATTTTAT AGTTCATAAA
AATCATGGAA TAGGAAAATT TTTAAAAATA GAAAAAATAA ATATAACTGG AGATTCAAGA
GATTATTTAG TCATTCAGTA TCAGGATGGG AAGATAAGTG TTGCCGCTGA TCAACTTGGT
AGTGTTAACA GATATAGATC AAGTGGAAAA ATAAAGCCAA AAATAAATAA ATTAGGAGGG
ACGGAATGGG AAAGAATAAA AGACAAAAAT AAGAAACAAA TCAAAAAAGT TGCTGTCGAT
ATTTTAAAAC TTTATGCAAA GAGAGAGAAA TTAAAGGGTT ACATTTACCC AGAAGATGGT
CCTTGGCAAG ATGAATTAGA GGAATCATTC CCTTATCAAC CAACACCTGA TCAAATTACT
GCTGTAGAAG AAATAAAATC TGATATGGAA AGCGAAAAGC CAATGGACAG GCTAGTTTGT
GGAGATGTAG GATTTGGCAA AACAGAAGTC GCTGTTCGGG CTATTTTTAA GGCTATTACA
TCAGGCAAAC AGGTAATATT ACTTGCTCCC ACAACAATCC TAGCTCAGCA ACATTGGAGA
ACAATAAGCA ATAGATTTTC ACCTTACCCA ATAAAAGTAT CATTACTCAA TAGATTCAAA
ACCGTTAATG AAAGAAAGGA AATCTATGCT GGTTTGAAAA ATAACAAAAT TGATTTAGTT
GTAGCAACGC ACCAAATTTT AGGAAAGGAA ATAGAGATAA AAAACTTAGG ACTACTTGTA
ATTGATGAAG AACAAAGATT TGGAGTAAGG CAAAAGGAGA AAATTAAAAA AATCAAAACA
AGCATAGACG TATTAACTCT ATCGGCAACT CCAATTCCAA GAACTCTTTA TATGAGTTTA
TCTGGACTAA GACAAATGAG CTTACTAAAT ACTCCTCCTC CATCAAGAAG ATCAATAAAA
ACCTATTTAG CTGAAATAGA TATGGATGTT ATAAGAACTG CCATTAATCA AGAACTTGAT
AGGGGAGGTC AAATTTTTTA TGTTCTTCCA AGAATTTCTG ATATTAATCA AGCTTTAAAT
AAATTAAAAA ATATTTTTCC AAGCTTAAAA TTTATTGTTG CTCATGGGCA AATGAACGAA
ACAGAGCTTG AAAATGCAAT GATTGCTTTT AATAATGGAG AAGTAGATCT TATGATATGC
ACAACAATAA TTGAAAGTGG ATTAGACATA CCTAAAGTAA ATACAATCAT TATTGAAGAT
TCTCACAAAT TTGGCCTTTC ACAACTTTAT CAACTTAGAG GAAGAGTTGG TAGAAGCAGT
GTACAAGCAC ATGCTTGGTT GTTTTATCCA GATATAAATA AAATTAATGA CGCTGCAAAA
CAAAGATTGA AAGCTATAAA AGATTTTTCA GAACTAGGAA GTGGTTACCA ACTTGCAATG
AAAGATATGG AAATAAGAGG TGTTGGTAGT TTATTAGGAG AAGAACAAAG TGGAAAGGTT
AATGCTATTG GATATGATTT ATATATAGAA ATGCTCCATG AGGCTATTTC AGAAATCAGT
GGGCAAGAGA TACCTGAAGT TAACGATACT CAAATTGATT TACCAATAAA TGCTTTTATA
CCTGCAACAT GGATATTAAA CAGAGAAGAG AAGCTTGAGG CTTACAAATC TGCTACTGAA
TGTTCAAAAA ATGATGAATT AACTGAATTA GCTACAGACT GGGTAAATAG ATATGGAAAC
TTACCCAAAC CTGTTGAGTC CTTAATTATG ATAATGAGAC TAAAATTACT AGCTAAAAAA
TGTGGTTTTA GTAAGATCAA GCTCAAAAAG CCAAACATCT TGATAGAGAC AAAATTAAAA
AATTCTACTT TTAAAATTCT TAAAAATTCT TTGGCAAGTA GTGTTCAAAA TAAATTTAAT
TTTAATGAAG GCGAACAATT ATCAATCATC ACTATAAGGG GTTTAGGTGC AACTGAAATT
CAAAATCAAA TTGATCAACT TATGTTGTGG TTCGAATCTT TTGAAAGAGA AATAAAGAAT
TTCGATAAAG AACTTCTTAT GAAAAAAGAA TAA
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| Protein sequence | MSLNTLVDYI SNSQITSELV KRISKNNELN IVGSSRYAKS IILDSIAKKE KKNILLICPN
VEIAYKWIGY FESINDKAVL YYPPKEHLPY SSINKSKEIE FSQLTVLSKL IKKEKNELNI
VISTERSLQP HLINKNLLIE NKLNLQKGVQ IEIQELANKL SLLGYTKDNV TSTEGFWSRR
GEIIDIYPVN NEFPIRLEFF DNVIEKIREY DPHTQKTLES INNIEIIQAG FNLLIKDKLN
NFSKNGIFNS EDINKNNLDR YLGIIEKTPS NIIDFIDRET ILVIDELEDC TKFANNWYQD
SESNFDNCEY ELNENLKNND INLQAKPNLH LKFDEILNSL GNFNLIKFYE FESKTNIDNK
FLLNDKRINS YSKNIGKLSN DINKNIKNNE KVWILSAQPL RTRTLLFEHE CNTNFLNNPN
DIDEAFKSIN NSTPLILKNK NNYEIEGFYL PIWKVVLITD KELFSQQSLF HNVFIRRKKR
SVNSNINVNK ISPGDFIVHK NHGIGKFLKI EKINITGDSR DYLVIQYQDG KISVAADQLG
SVNRYRSSGK IKPKINKLGG TEWERIKDKN KKQIKKVAVD ILKLYAKREK LKGYIYPEDG
PWQDELEESF PYQPTPDQIT AVEEIKSDME SEKPMDRLVC GDVGFGKTEV AVRAIFKAIT
SGKQVILLAP TTILAQQHWR TISNRFSPYP IKVSLLNRFK TVNERKEIYA GLKNNKIDLV
VATHQILGKE IEIKNLGLLV IDEEQRFGVR QKEKIKKIKT SIDVLTLSAT PIPRTLYMSL
SGLRQMSLLN TPPPSRRSIK TYLAEIDMDV IRTAINQELD RGGQIFYVLP RISDINQALN
KLKNIFPSLK FIVAHGQMNE TELENAMIAF NNGEVDLMIC TTIIESGLDI PKVNTIIIED
SHKFGLSQLY QLRGRVGRSS VQAHAWLFYP DINKINDAAK QRLKAIKDFS ELGSGYQLAM
KDMEIRGVGS LLGEEQSGKV NAIGYDLYIE MLHEAISEIS GQEIPEVNDT QIDLPINAFI
PATWILNREE KLEAYKSATE CSKNDELTEL ATDWVNRYGN LPKPVESLIM IMRLKLLAKK
CGFSKIKLKK PNILIETKLK NSTFKILKNS LASSVQNKFN FNEGEQLSII TIRGLGATEI
QNQIDQLMLW FESFEREIKN FDKELLMKKE
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