Gene A9601_10001 details

Gene Information

• Locus tag: A9601_10001
• Symbol: cspR
• ID: 4717710
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. AS9601
• Kingdom: Bacteria
• Replicon accession: NC_008816
• Strand: +
• Start bp: 870267
• End bp: 870749
• Gene Length: 483 bp
• Protein Length: 160 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 640078714
• Product: SpoU family tRNA/rRNA methyltransferase
• Protein accession: YP_001009391
• Protein GI: 123968533
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0219] Predicted rRNA methylase (SpoU class)
• TIGRFAM ID: [TIGR00185] rRNA methylase, putative, group 2

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.437921
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGAAGTCG CTCTTTTTGA ACCTAGAATC CCACAAAATA CTGGTAATAT TGCCAGATCA 
TGTGCTGCAT TTAATATACC TTTAAATCTT ATAGAGCCCT TAGGTTTTAA ACTAGAAGAT 
AAATATTTAA AAAGAGCAGG TTTAGACTAT TGGCCTTTAG TTACTGTTAA TCAGTATGAG 
AATTTTGAAA AATTTTTAGC GTCAAAATCA ACAAAAAGAA TAATCTCTTT TAGTAAAAAA 
AATGGATTAT ATTTGAAGGA TTTTAAATTT AAGCAAGATG ATATTTTGCT ATTTGGGAGA 
GAAGATTCAG GATTACCCGA TTCCATTATT GATAAAAGCG ACTTTTTAAT ATCAATATTT 
ATGCCGAATA TACAGACTGG TAACAATGAT CAAAAAGGTG TGAGAAGTCT AAACCTTTCT 
GTTGCATGCG GAATTGCTAT ATATGAGGCC TACAAACAAA TAAATTTTCA AAATGGTAAT 
TAA 

 

Protein sequence

MEVALFEPRI PQNTGNIARS CAAFNIPLNL IEPLGFKLED KYLKRAGLDY WPLVTVNQYE 
NFEKFLASKS TKRIISFSKK NGLYLKDFKF KQDDILLFGR EDSGLPDSII DKSDFLISIF 
MPNIQTGNND QKGVRSLNLS VACGIAIYEA YKQINFQNGN