Gene A9601_09541 details

Gene Information

• Locus tag: A9601_09541
• Symbol: dxs
• ID: 4717663
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. AS9601
• Kingdom: Bacteria
• Replicon accession: NC_008816
• Strand: +
• Start bp: 821829
• End bp: 823718
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 640078667
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001009345
• Protein GI: 123968487
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.277651
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTTTAA GTGAGTTAAG TCATCCAAAT CAACTTCATG GCTTAACAGT TTCACAATTA 
GAGGAAATTG CTTGTCAAAT TAGAGAAAGA CATCTTCAGG TAGTATCTAC TAGTGGTGGA 
CATCTTGGTC CTGGATTAGG TGTGGTTGAG TTGACATTGG CTCTATATCA AACTCTCGAT 
CTTGATTTTG ACAAAGTTGT TTGGGATGTA GGACATCAAG GTTACCCTCA TAAATTAATT 
ACAGGACGTT TCAGTCAATT TGATTCTCTA AGGCAACAAA ATGGAGTCGC TGGATATTTA 
AAAAGAAGTG AAAGTAAATT TGATCATTTT GGTGCTGGAC ATGCAAGTAC ATCTATTTCT 
GCTGCTTTAG GAATGGCAAT AGCGAGAGAT AGAAAAGGTG AAAATTATAA ATGTGTTGCT 
GTTATTGGAG ATGGAGCACT AACTGGAGGA ATGGCATTAG AAGCTATAAA TCATGCAGGT 
CACTTACCAA ATACTCCTTT AGTTGTAGTA TTGAACGATA ATGACATGTC TATTTCACCT 
CCTGTTGGAG CCCTTTCATC GTACTTAAAT AAGGTAAGAG TTAGTCCACC ATTGCAATTT 
TTGTCCGATA GTGTTCAAGA AAGTGTAAAA AATATACCCT TAATTGGTAA GGATATCCCA 
GAAGAACTCA AAAATATTAA AGGAAGTGTT AGACGACTAT CTGTGCCTAA GGTTGGAGCT 
GTTTTTGAAG AACTTGGATT TACATATATG GGTCCAATTG AAGGTCATGA TATTGCTAAT 
TTAATTAAGA CCTTTAACGC AGCCCATAAA CTTAAAAGAC CTGTACTTGT TCATGTTGTC 
ACAACAAAAG GGAAGGGATA CCCATATGCA GAAGCCGATC AGGTTGGATA TCATGCACAG 
TCTGCATTTG ATCTTACAAC TGGGAAATCT ATTCCATCAA AGAAACCTAA ACCTGTTAGT 
TATAGTAAAA TTTTTGGTCA AACCTTATTA AAAATATGTG AGCAAGATAG CAAAGTCATT 
GGTATCACAG CTGCAATGGC TACAGGTACT GGTTTAGATA TATTGCAAAA AAACATCCCT 
GATCAATATA TTGATGTAGG AATAGCAGAA CAACATGCAG TTACTCTTGC GGCAGGAATG 
TCTTGCGATG GTCTTAAACC TGTTGTAGCT ATTTATAGTA CTTTTCTTCA ACGTGCCTTT 
GATCAATTAA TTCATGATGT AGGGATACAA AATTTACCTG TATCATTCGT ACTTGATAGA 
GCTGGGATAG TTGGAGCTGA CGGTCCTACT CACCAAGGTC AGTACGATAT CAGTTATATG 
AGATCTATAC CTAATTTTGT ATTGATGGCT CCAAAGGATG AGTCTGAATT ACAGAGAATG 
TTAATAACTT CAATAAACCA TAATGGTCCT ACAGCTCTAA GAATACCAAG AGGCTCTGGA 
TTAGGAGTAG CTGTAATGGA TGAGGGTTGG GAACCTATGA ATATAGGCGA AGCTGAAATA 
CTTGAAGAAG GAGAAGATAT TTTAATTATT GCTTATGGTT CAATGGTCGC ATCAGCAATC 
GAAACAGCAA AGATATTAAA AAATATGAAC ATTAATGCAT GCATTGTTAA TGCGAGATTT 
GTTAAACCTC TTGATAAAAA TCTTATTATG CCTCTAGCAA GTAGGATTCA AAAAGTTGTA 
ACTATGGAAG AAGGAACTTT AATAGGTGGT TTTGGTTCCG CGATAGTTGA ACTATTTAAC 
GATAATGAAA TAAACATTCC TGTATACAGA ATAGGTATTC CTGATGTTTT AGTTGATCAT 
GCTTCACCTG ATCAGAGTAA AGAAAAATTA GGGCTTTTGC CTGATCAGAT GGCAGATAAA 
ATTATTAAGA AATTTAAGTT AGTTATTTAA 

 

Protein sequence

MLLSELSHPN QLHGLTVSQL EEIACQIRER HLQVVSTSGG HLGPGLGVVE LTLALYQTLD 
LDFDKVVWDV GHQGYPHKLI TGRFSQFDSL RQQNGVAGYL KRSESKFDHF GAGHASTSIS 
AALGMAIARD RKGENYKCVA VIGDGALTGG MALEAINHAG HLPNTPLVVV LNDNDMSISP 
PVGALSSYLN KVRVSPPLQF LSDSVQESVK NIPLIGKDIP EELKNIKGSV RRLSVPKVGA 
VFEELGFTYM GPIEGHDIAN LIKTFNAAHK LKRPVLVHVV TTKGKGYPYA EADQVGYHAQ 
SAFDLTTGKS IPSKKPKPVS YSKIFGQTLL KICEQDSKVI GITAAMATGT GLDILQKNIP 
DQYIDVGIAE QHAVTLAAGM SCDGLKPVVA IYSTFLQRAF DQLIHDVGIQ NLPVSFVLDR 
AGIVGADGPT HQGQYDISYM RSIPNFVLMA PKDESELQRM LITSINHNGP TALRIPRGSG 
LGVAVMDEGW EPMNIGEAEI LEEGEDILII AYGSMVASAI ETAKILKNMN INACIVNARF 
VKPLDKNLIM PLASRIQKVV TMEEGTLIGG FGSAIVELFN DNEINIPVYR IGIPDVLVDH 
ASPDQSKEKL GLLPDQMADK IIKKFKLVI