| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A9601_06631 |
|---|
| Symbol | menD |
|---|
| ID | 4717365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. AS9601 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008816 |
|---|
| Strand | + |
|---|
| Start bp | 585811 |
|---|
| End bp | 587574 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 640078376 |
|---|
| Product | menaquinone biosynthesis protein |
|---|
| Protein accession | YP_001009056 |
|---|
| Protein GI | 123968198 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
|---|
| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.977148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAT CTATTGAATG CAAAAATTTT CTTAGAAGTT TACAACTTTT AAATCTTCTT
ATAAAAATAG GAGTTAAAAA TTTAATACTA TGTCCAGGAA GTAGATCAGC ACCTCTAGCA
ATAGCGGCTG GAGAATTAAA TAAGCTAGGA CTGGTAAATA TTTTTAATTC AATAGATGAG
AGATCTGCTG GATTTCACTC TCTTGGGATT TCTGCTGCAT CAGGTCATCT TTCTTTAGTT
ATTACCACTT CTGGAACTGC GGTAAGTAAC TTATTGCCAG CAGCAGTTGA GGCAGACAGA
TCTTGTAAAG GTATTATATT TCTTACCGCT GATAGACCCT TAAGATTAAA AGATTGTGGC
GCTAATCAAA CAGTAAATCA AGAAGATTTT TTGAGTTCAG TCTGCAGAAA AGTTTTAAGT
ACAAATCTAA ATGGAATCCA TGAAACAGAA GAAAATGAAA TCTTTAATTT AGTGCGAATT
TCTGAGAAAC AAATGTCAAC CTTCCCTGGA CCTATACATT TAAATGTTCC TATTGATAAG
CCTTTAGATA TTTCATTCTT AAATAAAAAA AATGTTTTAG AGGTTTTTGA GAGAATTTAT
TTAAAGAAAA AATATGTCTT TCAGGAAGTT GACATAAAGT CTGATAAAAA AAAATTCTTA
GAAATTTCAA AAAATTTAAA TTTAGATGAG TCTGGCATTA TTTTGGTAGG TCCCTATCAA
GGTTCCATAA ATGACTTGCC TTCTTTTAAT AAGTCTTTAG GACAATTACA AGAAATTACT
GGTTGGCCAG TATTTGCTGA TCCTGTTTCA GGCGTTTATT CTGATTTGAG AGGGTTAATT
GTAAATTGGG AATTAGTCTT AAGGAAAAAT AAGAATTTAA TAAATTGTTA TCAACTTTTG
AGGCTTGGTC CTATGTCATC CTCAAATGAT TTGGAAAAGT TTTTAATTAA CTTCCAAGGG
GTACAAATTC TTATAAAGGA AAAAAACCAT AGAAAACTGG ACCCTATAAA AAAATCATTT
GAATACGATT TTGGGTTAAC AAATTTTACT TCTCTATTAA AAAAAGAGTT ATCAATTAAT
GAAAAAAATA AAAAGTCTCT TACTCCGTTA GCCCTAGATT TACTAGAGGA AGGTAAGCAA
GTTAAAGAAA TTTTAAAGGG GAATATTACT TATGAGAATC AAATTACTGA GTATAGGCTT
GCAAATCTTG TACCAAAACT TTGGCCAGCT GAAAATCCAA TAATGCTTTC AGCGAGTAGC
CCGATAAGAG ATTGGCTTAC ATTTTCTGAG AATGGTACTT TAACAAGAAA TTGTTTCAGC
TTTAGAGGAG CCTCTGGCAT AGACGGTACT TTATCCCTTG CATTAGGAAT TTCTAGAATT
AAAAATCCTC TACTTCTCGT TACAGGAGAT TTGGCTTTTC TGCATGATAT AAACGGTTGG
CTTATTGAAA ACTCAATCGA CATGAATTTA ACAATTCTCC TAATAAACAA TAATGGCGGA
AACATATTTA ATCGTATTTA TAAAAAAAAT TTAAAAGAAG ATGAATTTAA AAAACTATTT
CTTATGCCTA AAGAAATAAA CTGGCCGAAA CTTGCCGAGG GTTACCAAGT AAACTTTAGA
AGTGTGGCAA ATTTTAAAAA ATTACGAGAG GCATTCGATT GGAGCATTTC TATCGAGAAA
TCTGCAATAA TTAAAGTTGA TATTGATCCA CAAAATGAAA TTTGTGAAAA AAATTCTCTG
CTAGAAAAAA TAATTGGCAG TTAA
|
|---|
| Protein sequence | MTSSIECKNF LRSLQLLNLL IKIGVKNLIL CPGSRSAPLA IAAGELNKLG LVNIFNSIDE
RSAGFHSLGI SAASGHLSLV ITTSGTAVSN LLPAAVEADR SCKGIIFLTA DRPLRLKDCG
ANQTVNQEDF LSSVCRKVLS TNLNGIHETE ENEIFNLVRI SEKQMSTFPG PIHLNVPIDK
PLDISFLNKK NVLEVFERIY LKKKYVFQEV DIKSDKKKFL EISKNLNLDE SGIILVGPYQ
GSINDLPSFN KSLGQLQEIT GWPVFADPVS GVYSDLRGLI VNWELVLRKN KNLINCYQLL
RLGPMSSSND LEKFLINFQG VQILIKEKNH RKLDPIKKSF EYDFGLTNFT SLLKKELSIN
EKNKKSLTPL ALDLLEEGKQ VKEILKGNIT YENQITEYRL ANLVPKLWPA ENPIMLSASS
PIRDWLTFSE NGTLTRNCFS FRGASGIDGT LSLALGISRI KNPLLLVTGD LAFLHDINGW
LIENSIDMNL TILLINNNGG NIFNRIYKKN LKEDEFKKLF LMPKEINWPK LAEGYQVNFR
SVANFKKLRE AFDWSISIEK SAIIKVDIDP QNEICEKNSL LEKIIGS
|
|---|
| |