| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A9601_04911 |
|---|
| Symbol | topA |
|---|
| ID | 4717189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. AS9601 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008816 |
|---|
| Strand | + |
|---|
| Start bp | 425643 |
|---|
| End bp | 428249 |
|---|
| Gene Length | 2607 bp |
|---|
| Protein Length | 868 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640078203 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_001008886 |
|---|
| Protein GI | 123968028 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.425235 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATCACA CACTTGTTAT TGTTGAAAGT CCCACCAAAG CAAAAACTAT AAGAAAGTTT
TTGCCATCTA ATTATGAAGT TCTCGCTTCA ATGGGACATG TAAGAGATCT TCCAAAAGGA
GCTGCTGAAA TACCTGCTTC GGTTAAAAAG GAAAAATGGT CAAGGATAGG AGTTAATACA
ACAGAAGATT TTGAACCACT TTATATAGTT CCAAAAGATA AGAAAAAGGT TGTTAAAGAG
TTAAAAGATG CATTGAAAGG TGCGACCCAG CTATTACTTG CAACTGATGA AGATAGAGAG
GGAGAGAGTA TTAGCTGGCA TCTCCTGCAA ATTCTTAAGC CTAAAATACC AACTAAGAGA
ATGGTTTTTC ATGAAATCAC AAAAAAGGCA ATTAATAAAG CTTTAGATCA AACAAGAGAA
ATTGATATGG AACTTGTTCA GGCTCAAGAA ACAAGAAGAA TCCTAGACAG GCTTTTTGGA
TATGAATTAT CTCCTTTACT TTGGAAGAAG GTAGCCCCCC GACTATCTGC TGGTCGTGTT
CAATCTGTTT CTGTAAGACT TCTTGTTAGG AGAGAGAGAG AAAGAAGATC CTTTAAAAAA
GCTAGTTACT GGGGGATTAA AGCTTCCTTA GTAAAAGATA ATATTACTTT CGAAACTAAA
TTATTCAGTT TAAAAGGTCA AAGAATTTGT AACGGTTCCG ATTTCGACGA ACAAACCGGT
AAATTAAAAG AAGGAAACAA ATCTTTAATA ATTGGAGAAG AACAAGTAAA TGATTTATTG
AATACTTTTT CCTCTGAGGA TTGGTTAGTC TCAAAAATCG AAAAAAAGCC ATCCACTCGT
AAGCCAGTTC CTCCATTTAC AACAAGCACA TTACAACAAG AAGCAAATAG GAAGCTTCGT
TTGTCTTCAA GAGAAACTAT GAGATGTGCA CAAGGGCTAT ATGAGAGAGG TTTCATAACA
TATATGAGAA CTGATTCAGT TCATCTCTCC GAACAAGCCA CAAGAGCTGC TAGAGAATGT
GTCAGTTCTA TGTATGGGAA AGAATATTTA TCTAACTCAC CAAGACAATT TAATTCAACT
GCAAGAAATG CTCAAGAAGC ACACGAAGCT ATTAGGCCTG CAGGTGAGGT ATTTAAAACA
CCAAAGGAAA CTAATTTAAC TGGTAGAGAC TTATCACTTT ACGATTTAAT TTGGAAAAGA
ACTGTAGCTA GTCAAATGGC GGAAGCTAGG TTAACAATGA TTAATGCTGA AATTAGCGTA
GGGTATGGAT TATTTAAATC GAGCGGGAAA AGTATTGATT TCCCAGGATT CTTCAGAGCT
TATGTCGAGG GAAGTGATGA TCCAAGTTCA TCCCTTGAAC AACAAGAAAT TATTCTCCCA
AACTTAACAA CTGGAACATG TCTTGAAGTT ACTAGTAAGG AATCTACTTT TCATGAAACT
AAGCCTCCTG CAAGATATAC AGAGGCTGCA TTAGTTAAAG TTCTTGAAAA AGAAGGGATT
GGAAGACCCT CTACCTATGC CAGCATTATT GGGACCATAG TTGATAGAGG TTATGCGAAT
ATATCTTCCA ATACTTTGGC TCCAACGTTT ACAGCTTTTG CTGTTACTGC TCTATTAGAA
GAACATTTTC CTGATCTGGT TGATACTACT TTTACTGCAA AAATGGAATC TTCATTGGAT
GAAATATCTT CAGGCAATCT TGAGTGGCTA CCATACCTCG AAACTTTCTA TAAAGGTAAA
AATGGTTTGG AGATAAAGGT TCAGAAAACA GAGGGTAATA TTGATGGTAA AGCTTATAGA
CAAGTTGATT TCGAAGACCT TCCTTGCGTA GTCAGAATAG GCTCAAACGG ACCTTGGTTA
GAGGGTACAA AAATTGATGA ATCTGGAAAT GAAATTCAGG CTAAAGGTAA TCTTCCAATG
GATATTACTC CTGGTGATTT AGACATTAAA CAAGTTGATC AAATCTTAAG TGGCCCATCG
GATCTTGGAA CTGATCCAAA AACCGGGGAA AAAGTCTTTT TAAGATTTGG TCCTTATGGA
CCTTACGTTC AATTAGGAAA TAATGATCAA GATAAAGCTA AACCAAGGAG AGCCTCATTA
CCCAAAGAGT TGAAAACTGA TGACCTAACT CTAGATGAGG CTCTTGTACT TTTAAGTTTG
CCTAGATTGT TAGGAGCTCA TCCTGAAGGA GGAGTTGTTG AGGCTGATAG AGGAAGATTT
GGCCCGTATA TCAAATGGAT TAAAAATGAA AATGAATCTG AAAACAGATC CTTAAAGAAA
GAGGATGATG TTTTTAGAGT TGATATAAAA CGAGCATTAG AAATTCTTGC GATGCCAAAA
ATGGGTAGAG GTGGTCAAGA GGTACTTAAA GACTTTGGAA AACCAAAAGA ATTTAAAGAA
AAAATTCAAA TATTAAATGG AAGATATGGC GTCTATTTAA AATGTGGCAA AACTAATGTA
TCGATTGCCA AAGATACTGA CATAGAAAAA TTTACCATAG ATGAAGCAGT ATCTCTTTTA
GAAGAAAAAC TAAAAGATAA AAAAGGTGCA ATTTTAAAGA AAACAAAGAT TAGTAATAAA
AAAACTTCAA GGAAAAAGAA AAGTTAG
|
|---|
| Protein sequence | MDHTLVIVES PTKAKTIRKF LPSNYEVLAS MGHVRDLPKG AAEIPASVKK EKWSRIGVNT
TEDFEPLYIV PKDKKKVVKE LKDALKGATQ LLLATDEDRE GESISWHLLQ ILKPKIPTKR
MVFHEITKKA INKALDQTRE IDMELVQAQE TRRILDRLFG YELSPLLWKK VAPRLSAGRV
QSVSVRLLVR RERERRSFKK ASYWGIKASL VKDNITFETK LFSLKGQRIC NGSDFDEQTG
KLKEGNKSLI IGEEQVNDLL NTFSSEDWLV SKIEKKPSTR KPVPPFTTST LQQEANRKLR
LSSRETMRCA QGLYERGFIT YMRTDSVHLS EQATRAAREC VSSMYGKEYL SNSPRQFNST
ARNAQEAHEA IRPAGEVFKT PKETNLTGRD LSLYDLIWKR TVASQMAEAR LTMINAEISV
GYGLFKSSGK SIDFPGFFRA YVEGSDDPSS SLEQQEIILP NLTTGTCLEV TSKESTFHET
KPPARYTEAA LVKVLEKEGI GRPSTYASII GTIVDRGYAN ISSNTLAPTF TAFAVTALLE
EHFPDLVDTT FTAKMESSLD EISSGNLEWL PYLETFYKGK NGLEIKVQKT EGNIDGKAYR
QVDFEDLPCV VRIGSNGPWL EGTKIDESGN EIQAKGNLPM DITPGDLDIK QVDQILSGPS
DLGTDPKTGE KVFLRFGPYG PYVQLGNNDQ DKAKPRRASL PKELKTDDLT LDEALVLLSL
PRLLGAHPEG GVVEADRGRF GPYIKWIKNE NESENRSLKK EDDVFRVDIK RALEILAMPK
MGRGGQEVLK DFGKPKEFKE KIQILNGRYG VYLKCGKTNV SIAKDTDIEK FTIDEAVSLL
EEKLKDKKGA ILKKTKISNK KTSRKKKS
|
|---|
| |