| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A9601_02071 |
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| Symbol | trmE |
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| ID | 4716891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. AS9601 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008816 |
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| Strand | - |
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| Start bp | 190826 |
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| End bp | 192208 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 640077906 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001008602 |
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| Protein GI | 123967744 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.214831 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATTCGA TAGTTACTAC AGAAGATACG ATAGCCGCAA TTGCTTCAGC TATAAGTATT
GGGAAGGGAG GAGTTGCGAT AATAAGAGTA TCAGGGAAAG ACGCAATAAA TTCTTGCAAA
AAGATTGTTC AAACTAAATC TAAATATGCA TGGGAATCAC ATAGAGTTTT TCGTGGTTTT
ATTCAGGAAA ATAAACAAAA TAAATTTATA GATGAGGTTT TAATTTTAGT GATGAAATCC
CCAAATAGCT TCACAGGAGA GGATGTAGTT GAACTTCATT GCCATGGCGG AATTATCATA
GTAAATAAAG TTTTAAAGAT ATTATTATCT AATAATTCTA GAGTTAGACT TGCAAACCCA
GGAGAATTTA GTCAAAGAGC TTTTCTTAAT GGGAAAATAG ACCTTACTCA AGCCGAGTCG
ATTAATCAAT TAATTAATGC AAGCAATGCC AGATCAGCAG AGTTAGCCTT TAGCGGGGTT
CAAGGAGAAA TAAAGAAAAA AATTGATGAT ATTAAAAATG ACCTTATAAA TCAACTTTGC
GAAATAGAAG CGAGAGTTGA TTTTGAAGAA GACTTCACAG ATTTTGATTA CACCAAATAT
CTAAAAAACA TTAAAAAAGT CAAAGAAAAA ATAGAATTAC TAATAGAAAA TGCAAAAAGA
AATTCATATA TTCACAATGG AATATCCATT GCGCTTATAG GAAAAACAAA TGTTGGCAAA
AGCTCTTTAT TAAATTTGCT TGCGAAAAAA GAGAAAGCAA TCGTAACTAA TATTCCTGGA
ACAACTAGAG ATGTTATTGA AGTTAATTTA ACTATTAATG ATATTCCAAT GAAAATAATT
GATACTGCTG GCATAAGAGA AACTCATGAA CAAATTGAAA GTATTGGAAT TAAAAAAAGT
TTTGGGAAAA TAAAAGAGTC AGATTTTATA ATTTATATTT ATAGTCTTGA AGAAGGATTT
AATGAAGAAG ACAAAAAAAT AATACAAGAA ATTCCCAAAG AAAAATTAAT TACTATTTTG
GGCAATAAAA AAGATTTAAT TGATTGCAAA AATATTAATT CAAATGAGTT AAAACACACA
ATTCTTATGA GTATTAAGAA TAATGATGGT GAAAGATTAT TAATAGACAC AATTATAAAA
AAATGCGGAT TAAAACAAGT AGAAAATATC AATATATTTT TAAACGATAG ACATCTAACA
AATTTGTCTG CTTGCTTATC TAATTTAAAT GATACTGATG AAATAATTGA AAATAAATTA
CCATTTGATT TGTTATCAAT TGAGCTGAGA GATGGAATTC AAAACTTATC TAAAATAACT
GGTCAAGAAT TAACAGAGGA ACTTCTAGAT AATATTTTTT CTAAGTTTTG TATTGGTAAA
TAA
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| Protein sequence | MDSIVTTEDT IAAIASAISI GKGGVAIIRV SGKDAINSCK KIVQTKSKYA WESHRVFRGF
IQENKQNKFI DEVLILVMKS PNSFTGEDVV ELHCHGGIII VNKVLKILLS NNSRVRLANP
GEFSQRAFLN GKIDLTQAES INQLINASNA RSAELAFSGV QGEIKKKIDD IKNDLINQLC
EIEARVDFEE DFTDFDYTKY LKNIKKVKEK IELLIENAKR NSYIHNGISI ALIGKTNVGK
SSLLNLLAKK EKAIVTNIPG TTRDVIEVNL TINDIPMKII DTAGIRETHE QIESIGIKKS
FGKIKESDFI IYIYSLEEGF NEEDKKIIQE IPKEKLITIL GNKKDLIDCK NINSNELKHT
ILMSIKNNDG ERLLIDTIIK KCGLKQVENI NIFLNDRHLT NLSACLSNLN DTDEIIENKL
PFDLLSIELR DGIQNLSKIT GQELTEELLD NIFSKFCIGK
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