| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2421 |
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| Symbol | |
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| ID | 4710229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 2658502 |
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| End bp | 2661216 |
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| Gene Length | 2715 bp |
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| Protein Length | 904 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639856897 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001003986 |
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| Protein GI | 121999199 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0819967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAAC CGGACGACCG CCTGGTCCTG GTGGACGGCT CCTCCTACCT CTACCGCGCC
TTCCACGCCC TGCCGGCACT GACCAACGCC AACGGCGAAC CGACCGGGGC GCTCTACGGC
GTGGTTAACA TGCTCCACAA GCTCCTTGCC GAGGAGCCCG AGGCGCGCTT CGCCGTGGTC
TTCGACGCCC CGGGCAAGAC CTTTCGCGAT GAGCTCTTCG AGCAGTACAA GGCGCACCGG
CCACCCATGC CCGATGAACT GCGTGCCCAG CGGGAGCCGC TCAAGGCGAT CATCGCTGCG
CTCGGGGTGC CGGTGCTCGA GGTGCCCGGT GTGGAGGCCG ACGATGTCAT CGGGACCCTG
GCCGCGCGCG CCTCGGGGCC GGTCCTGATT TCCACCACGG ACAAGGACAT GGCGCAGCTG
GTGGACGAAC AGGTGACCTT GCTCAACACC ATGAGCGGCA CCCGTCTGGA CCCGGAGGGG
GTGCGCGAGA AGTTTGGTGT CCCCCCCGAG TTGATCCGCG ACTACCTGGC CCTAGTGGGC
GACACCTCGG ACAACATCCC CGGTGTTCCC AAGGTCGGAC CGAAGACCGC TGCCAAGTGG
CTCAATGCCT ACGGCAGCCT CGACGCACTG CGCGAGCAGG CCGACGAGAT CCGCGGTAAG
GTCGGCGAGA GCCTCCGCGC CCATCTCGAC GAGCTGCCGC TGTCGGTGGA TCTGGTCACC
ATCCGCTGCG ACCTGGCCCT CGAGGTCGCC CCGGAGGACC TGGTTCGCCA GAGCCCGGAC
CGCGAGACCC TCGGTGGGCT CTATCAGCGC TACGGTATGC GTCGCTTCCT CGCCGAGCTG
CAGGCCGGCG ACGCCGCCGC CGCAGCCGAC GGCACCGGCG CCAGTCTCCC CCCCAACGCG
CCCGAGGTGG CCTACGAGGT GGTCCTCGAC GACCACGGTC TCGCCGCCTG GATGGAGCGG
CTACGCAACG CCGATGCCTT CTCCATCGAC CTGGAGACGA ACAGCCTCAA CTACATGGAT
GCCGAGATCG TCGGCGTGTC GTTGGCTGTC GAGCCGGGGC AGGCCGCCTA TCTGCCCGTG
GCCCACTGCG GGCCCGGTGC CCCGGACCAG CTCGACCGGG ACCGGGTGCT CGACGCGCTG
CGCCCCCTGC TCGAGGCCGA GCAGCCGGAG AAGATGGGTC AGAACCTCAA GTACGACATG
AGTGTCCTGG CCCGCTACGG GATCGAGCTG CGCGGGGTGG CCTACGACAG TATGCTCGAG
TCCTACGTCC TCGACTCCAC GGCGACCCGC CACGACATGG ACTCGCTGGC CAGCAAGTAC
CTGGGGGTCG AGGTCACCAG CTACGAGCAG CTCTGCGGCA AAGGGGTGCG GCAGGTCCCG
TTCGCCGAGA TCGACGTCGA GCGTGCCGGC CACTACGCCG CCGAGGACGC CGACATCGCG
CTGCGCCTTC ATCAACTTCT TTACCCCCGG CTGCAGGCCG AATCGGGGCT GCTGCGAGTC
TTCAGCCAAC TCGAGATGCC CCTGTTGCCG GTTCTTTCGC GCATGGAGCG CCACGGGGTG
CGGGTCGATT GCGACCTGCT GGAGCGCCAG AGCGAGGAGC TGGCCGGGCG CATGGCCGAG
GTGGAGCAGC GCGCCCACGA GGAGGCCGGC GAGGCGTTCA ACCTCGGCTC ACCCAAGCAG
ATCCAGGAGA TCTTCTTCGA GCGTATGGGA TTGCCCGTGA TCCAGCGCAC CCCCAAGGGC
CAGCCGTCTA CCGCCGAGTC GGTGCTCGAA GAGCTCAGCG CGCGGGGCCA CGAACTGCCG
CGGTTGATCC TTGAGCATCG GGGGCTGTCC AAGCTCAAGT CCACCTATAC CGACAAGCTG
CCGCAGCTGA TCCACCGGGA CACCGGTCGT GTGCACACCT CCTACCATCA GGCGGTGGCG
GCGACCGGAC GGCTCTCCTC ATCCGATCCC AACCTGCAGA ACATCCCGGT GCGCACCCCG
GAAGGGCGGC GCATCCGCAA GGCCTTCGTG GCCAGCCCCG GGCACCGGCT GATCACCGCC
GATTACTCCC AGGTCGAGCT TCGCATCATG GCCCACCTCT CCGGCGATGA GGGCCTGCGC
CGGGCCTTCG AGCAGGGCGA GGACATCCAC CGCGCCACCG CCGCCGAGGT CTTCGCCGCC
GATGAGGTCA ACGACGAGCA GCGCCGCGCC GCCAAGGCGA TCAACTTCGG GCTGATCTAC
GGCATGTCCG CCTGGGGCCT GGGGCGGCAG CTGGGCATCC CGCGCGACGA GGCGCAGACC
TACATCGACC GTTACTTCGA GCGCTACCCC GGTGTGCGTG CCTTCATGGA TCGGGCGCGC
GAGCAGGCCC GGGAGCAGGG TTATGTGGAG ACCGTGTTTG GCCGCCGACT GCACGTCCCG
GAGATCCACA GCCGCAACCG TCAGCGCCGC GAGTACGCCG AGCGCACCGC CATCAATGCC
CCTATGCAGG GGACCGCGGC GGATGTCATC AAGCGGGCCA TGATCGACGT CGACGCCCTG
CTCAATGAGC GCTTCCCGGA GAGCCGACTG GTGATGCAGG TGCACGATGA GTTGGTGCTC
GAGGTCCCTG AGGCGCAGGC AACGGCGGTG GGCGATGAGG TGCGCCGGCT GATGGAGGGA
TCGGATCGCG GCATGGTGTC GGTTCCCTTG GAAGTCGAGC TCGGTGTTGG CGATGATTGG
GAACAGGCCC ACTGA
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| Protein sequence | MTQPDDRLVL VDGSSYLYRA FHALPALTNA NGEPTGALYG VVNMLHKLLA EEPEARFAVV
FDAPGKTFRD ELFEQYKAHR PPMPDELRAQ REPLKAIIAA LGVPVLEVPG VEADDVIGTL
AARASGPVLI STTDKDMAQL VDEQVTLLNT MSGTRLDPEG VREKFGVPPE LIRDYLALVG
DTSDNIPGVP KVGPKTAAKW LNAYGSLDAL REQADEIRGK VGESLRAHLD ELPLSVDLVT
IRCDLALEVA PEDLVRQSPD RETLGGLYQR YGMRRFLAEL QAGDAAAAAD GTGASLPPNA
PEVAYEVVLD DHGLAAWMER LRNADAFSID LETNSLNYMD AEIVGVSLAV EPGQAAYLPV
AHCGPGAPDQ LDRDRVLDAL RPLLEAEQPE KMGQNLKYDM SVLARYGIEL RGVAYDSMLE
SYVLDSTATR HDMDSLASKY LGVEVTSYEQ LCGKGVRQVP FAEIDVERAG HYAAEDADIA
LRLHQLLYPR LQAESGLLRV FSQLEMPLLP VLSRMERHGV RVDCDLLERQ SEELAGRMAE
VEQRAHEEAG EAFNLGSPKQ IQEIFFERMG LPVIQRTPKG QPSTAESVLE ELSARGHELP
RLILEHRGLS KLKSTYTDKL PQLIHRDTGR VHTSYHQAVA ATGRLSSSDP NLQNIPVRTP
EGRRIRKAFV ASPGHRLITA DYSQVELRIM AHLSGDEGLR RAFEQGEDIH RATAAEVFAA
DEVNDEQRRA AKAINFGLIY GMSAWGLGRQ LGIPRDEAQT YIDRYFERYP GVRAFMDRAR
EQAREQGYVE TVFGRRLHVP EIHSRNRQRR EYAERTAINA PMQGTAADVI KRAMIDVDAL
LNERFPESRL VMQVHDELVL EVPEAQATAV GDEVRRLMEG SDRGMVSVPL EVELGVGDDW
EQAH
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