| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2412 |
|---|
| Symbol | |
|---|
| ID | 4709981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 2646737 |
|---|
| End bp | 2648617 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639856888 |
|---|
| Product | arginine decarboxylase |
|---|
| Protein accession | YP_001003977 |
|---|
| Protein GI | 121999190 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
|---|
| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG ACTGGAGCAA CCGACCCGCC CGCGAGGTGT ACAACGTCCC TCGCTGGAGC
GAGGGGTATT TCGACATCTC GGCCGCCGGG CGACTGCAGG TCCGCCCCCA CCGCGGCAGC
GGGCCGGCCG TGGATCTGCG CCGGATCGTC GCCGACCTGC CCGATCAGGG CGTCTCCCCG
CCGGTGCTGA TCCGCTTCCC GGCGATCCTG CGCGATCGCG TCGACGCCCT GTGCGACGCC
TTCGGCGCGG CCATGGCCGA GGCCGATTAC CGCGGCGCCT ACCAGCCGGT CTACCCGATC
AAGGTCAATC AGCAGCGCTC GGTGATCGAG GAGATCGTCG GCGATGGCCG GCGGGTGGGC
CTGGAGGCCG GCAGCAAGCC CGAGCTGATG GCGGTGCTGG CCCTGGCCCC GACCGGGGGC
ACCGTGATCT GCAACGGCTA CAAGGACCCC GAGTACGTCC GCCTGGCCCT GCGCGGCCTG
CAGCTGGGGC TGCAGGTCCA CCTGGTCCTC GAGAAACGCT CCGAGGCGCG GATGATCATC
CGCGAGGCAC GCCGGCTGGG GGTGGCGCCG CGGCTGGGGC TGCGGGTCCG CCTGGCCTCC
ATGGGTGCCG GCAAGTGGCA GAACACCGGC GGGGAACGCT CGAAGTTCGG CCTGACCGCC
GCCGATGCCC TGGCGGTGGT GGAGGAGCTG CGCGAGGCGG ATCTGCTGGA GCGCCTGGAG
CTGCTGCACT TCCACCTCGG CTCGCAGATC GCCAACGTCC ACGATATCCG CGCGGGTCTC
TCGGAGGGGG CACGCTTCTA CACTGAGCTA CGCCGCCTGG GGGCGCCGGT GAGCAAGGTG
GATGTGGGCG GCGGCCTGGG GGTGGACTAC GAAGGCACGC GCTCCCGGGC CTTCTGCTCG
ATGAACTACA GCATCGCCGA GTACGCCCAT AACGTGGTGG CCGCCCTCAA GGCGGTCTGC
GACGAGGCCG GGCTGCCACA CCCGACGCTG ATCACCGAGA GCGGCCGCGC CATGACCGCC
CACCATGCGG TGCTGGTGAC GCCGGTGATC GACACCGACA GCCGCGAGGC CAGCGCCCCG
GAACCGCCGC CGGCGGACGC CCCCAAGGTC TTGCGCGAGC TCTACCGCAC CCTGGAGGAG
CACGCCCAGC GCCCGGCCAC CGAGGCCTAC CACGACGCCT GCCACTACCT GCAGGAGGCG
CGCGGGCTTT ACCTCCACGG GGTCCTGGAT CTGCCCCAGC GGGCCTACGC CGAGCGCTGC
TATCAGGCCA TCGGCACGCG GCTGCGCGGG CGGCTCAACC CCGGTCGCCC CCACCAGCGA
GAGGTGCTCG ACGCCCTCAA CGAGGGGTTG GCCGACAAGC TGTTCGCCAA CTTCTCGGTG
TTCCAGTCGA TCCCCGACGT GTGGGCGATC GATCAGATCT TTCCCATCGT CCCCCTCTCG
GGGCTCGACC GGCCGGCCTG CCGGCGTGGC GTGGTCCAGG ATCTGACCTG CGACTCCGAC
GGCACCGTCT CGCTCTACGT CGACGGCGAC GGGGTGGAGG GCACCCTGCC CCTGCCCGAG
CCGGAACCCG GCGAACCGCT ATGGCTGGGC ATCTTCCTGG TCGGTGCCTA TCAGGAGATC
CTCGGCGATC GGCACAATCT CTTCGGCGCC ACCGACTCGG TGAACGTGGA GGTCGATGAG
CAGGGGCACC GATTCATCAC CGCCACGCGC GGCGACAGCA TCGGCGGGGT CTTGCGCTCG
GTGGGCTTCG ACGAGCGGGA GCTCAGCGGC GCGTATCGGC GCCGCATCGC CGCCGCCGAT
CTCGATGATG CGGCCCGCCG CGCCTGCCTG GCCGACCTCG AGGCCGGGCT GCTCGGCGGC
ACCTATCTGG AGGGCCCCTG A
|
|---|
| Protein sequence | MSDDWSNRPA REVYNVPRWS EGYFDISAAG RLQVRPHRGS GPAVDLRRIV ADLPDQGVSP
PVLIRFPAIL RDRVDALCDA FGAAMAEADY RGAYQPVYPI KVNQQRSVIE EIVGDGRRVG
LEAGSKPELM AVLALAPTGG TVICNGYKDP EYVRLALRGL QLGLQVHLVL EKRSEARMII
REARRLGVAP RLGLRVRLAS MGAGKWQNTG GERSKFGLTA ADALAVVEEL READLLERLE
LLHFHLGSQI ANVHDIRAGL SEGARFYTEL RRLGAPVSKV DVGGGLGVDY EGTRSRAFCS
MNYSIAEYAH NVVAALKAVC DEAGLPHPTL ITESGRAMTA HHAVLVTPVI DTDSREASAP
EPPPADAPKV LRELYRTLEE HAQRPATEAY HDACHYLQEA RGLYLHGVLD LPQRAYAERC
YQAIGTRLRG RLNPGRPHQR EVLDALNEGL ADKLFANFSV FQSIPDVWAI DQIFPIVPLS
GLDRPACRRG VVQDLTCDSD GTVSLYVDGD GVEGTLPLPE PEPGEPLWLG IFLVGAYQEI
LGDRHNLFGA TDSVNVEVDE QGHRFITATR GDSIGGVLRS VGFDERELSG AYRRRIAAAD
LDDAARRACL ADLEAGLLGG TYLEGP
|
|---|
| |