| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2370 |
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| Symbol | |
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| ID | 4709225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 2604072 |
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| End bp | 2606084 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639856845 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001003935 |
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| Protein GI | 121999148 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACGGTC AATGTTTCCC TGATTCGCGG ACGGAACGGG GTACTCAGTC AGCCCGCCCC
CTCCTGCCCC GCATCCTGTT CATCGCGGCA CTGCTCGCGC CGATGCTCGT TGTCGCCGAC
GATGACGCCT GGGCGGAGCG CGGCGACGGC ATTACGTTGA ACTTTGAGGA TGCGGATATC
AAGTCGGTGA TTGCGCTCGT CTCCGAGCGC ACCGGGCGGA ACTTTGTGGT TGACCCCCGG
GTCCGCGGCG AACTCACCGT CATCTCCAGC CAGCCGGTGG ACGACGACCA GCTCTACCAG
GTCTTCCTCT CCGCCCTACA GATCCACGGC TTCGCCGCCA TCCCCGCGGA CGGGGCCATC
CGCATCGTGC CCAAGAACAT CGCCAAGCGC GACCAGACCC CCGTCCCCGA GCCCGGCACT
GCGGAGAGCG GCCACAACTT CGTCACCCAG GTCATTCCCA TTGAGCACGT CGAGGCCTCG
GAGCTCATTC CCCTTCTGCG ACCGCTGATC TCGGACGAGG CCGAACTAGC CGCCTACTCG
GAGACCAACA CGCTGATCGT CTCTGAGACC GCTGGCAACA TCGGGCGGCT CAAGCGCTTG
ATCGACCGCG TCGACCAGGA CACCACCGGC GTCACGGAGG TGGTCCCCCT TGAACACGGC
TCGGCGAGCG AGATCGTCGA GATGGTCGAG GCCATCGAGC CGGAGAAGCG CGCCGGCCGC
CGCCTACTGC TTGCCGCCGA CGACCGAAGC AACAGCGTTC TGGTCGGCGG CGACCCGGCC
CGGCGACCCA GCGTCATGGA GCTGATCCAG CGCCTCGACG CCGAGCTCGA GGACGAGGAA
GGCGCTGCAG TGATCTACCT GCGCTATAGC GATGCCGAGA GCATCGTCCC CATCCTGGAG
GGCATGGCCG AGGGGATGGC GCGCGGCCCG GAGGGTGAGA CCGGCGTCAG CATCCACGAC
CACGAGGCGA CCAACGCCCT GATCATCAAT GGCCCGCCCG ATCTGGTCGC CAAGCTGCGC
GGGGTAGTGA ACCGGCTCGA CGTGCGTCGA GCACAGGTCC TGGTGGAGGC GATCATCGCC
GAGGTCTCCG CCGAGCGCAG CCAGGAGCTG GGCATTCAGT GGGGCGCCCT CGGCGATCAG
GGGGTGGGCT TGGTCAATTT CGACGCGGCC GGAGGCGGAT CTGTGACCAA CATCGGGCGC
GCAGCGGCGG GAGGCACCGA TGCGCTGGGT AACCTGTCCC TCGGATCCGG CCTCACCGCC
GGCGCCGCCA CCCGCGGCGG CGAGCTGGGT GTGCTGCTAC GGGCGCTCTC CAGCGAATCG
GACAGCAACA TCCTCTCGAC CCCCTCGGTG ATGACCATGG ACAACGAGGA GGCGGAGATC
GTCGTCGGTC AAAACGTCCC CTTCGTCACC GGGCGCGAGG TCGGCGACAC CCGAGACTTC
CAGTCGATCC AGCGCGAGGA CGTCGGCGTG CAGCTGCGCA TCCGCCCCCA GATCAACGAG
GGCGACAGCC TCAAGCTGGA CATCGAGAAG GAGGTCTCCG ACGTCCAGGA GCGGGGCGAG
GCGGAGGATA TCGTCACCAG CATGCGCTCG ATCACCACCA GCGCCATGGT CGACGACGGC
GAGATCATGG TCCTTGGCGG CCTCATGGAC GAGCAGGCCG AGAGCCAGAC GGACCGGGTC
CCGGGCCTGG GCAGCATCCC GGGCCTCGGT TGGCTCTTCC GCTACGAGAG CAGCGCGGCA
CAGAAGCAGA ACCTGATGGT CTTCCTGCGC CCGCGGATCA TCGAGAACCG CGACGATGCC
CGGGAGCTGA CCAGCCCCAA GTACAACCTG ATCCGCAATC GTCAGCTCGC CTCCCGGGCC
CGCGGCATGC GCTTCCTCGA CGACGAAGAC ATCCCCGTTC TGTCGCAGCG GCGGGCGTTC
ATGGAGCTGC CGCCGGAGTT CGGGGATCGC GCCGGGGCGC CGCGACAAAG CGGCAACCTC
GACGCCCCCC CGCGCCGGCC GGACCTGTTC TAG
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| Protein sequence | MHGQCFPDSR TERGTQSARP LLPRILFIAA LLAPMLVVAD DDAWAERGDG ITLNFEDADI
KSVIALVSER TGRNFVVDPR VRGELTVISS QPVDDDQLYQ VFLSALQIHG FAAIPADGAI
RIVPKNIAKR DQTPVPEPGT AESGHNFVTQ VIPIEHVEAS ELIPLLRPLI SDEAELAAYS
ETNTLIVSET AGNIGRLKRL IDRVDQDTTG VTEVVPLEHG SASEIVEMVE AIEPEKRAGR
RLLLAADDRS NSVLVGGDPA RRPSVMELIQ RLDAELEDEE GAAVIYLRYS DAESIVPILE
GMAEGMARGP EGETGVSIHD HEATNALIIN GPPDLVAKLR GVVNRLDVRR AQVLVEAIIA
EVSAERSQEL GIQWGALGDQ GVGLVNFDAA GGGSVTNIGR AAAGGTDALG NLSLGSGLTA
GAATRGGELG VLLRALSSES DSNILSTPSV MTMDNEEAEI VVGQNVPFVT GREVGDTRDF
QSIQREDVGV QLRIRPQINE GDSLKLDIEK EVSDVQERGE AEDIVTSMRS ITTSAMVDDG
EIMVLGGLMD EQAESQTDRV PGLGSIPGLG WLFRYESSAA QKQNLMVFLR PRIIENRDDA
RELTSPKYNL IRNRQLASRA RGMRFLDDED IPVLSQRRAF MELPPEFGDR AGAPRQSGNL
DAPPRRPDLF
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