Gene Hhal_2246 details

Gene Information

• Locus tag: Hhal_2246
• ID: 4709501
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: -
• Start bp: 2461076
• End bp: 2466766
• Gene Length: 5691 bp
• Protein Length: 1896 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 639856722
• Product: excinuclease ABC, A subunit
• Protein accession: YP_001003812
• Protein GI: 121999025
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0178] Excinuclease ATPase subunit
• TIGRFAM ID: [TIGR00630] excinuclease ABC, A subunit

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.186636
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCGCGAAC CGATCCGTAT CCGCGGCGCC CGCCAGCACA ACCTGCAGGG GCTCGATCTC 
GACCTGCCAG CCGGCGAGCT GATCGTCGTC ACCGGTGTCT CCGGCTCCGG GAAATCCTCC 
CTGGCCTTCG ACACGGTCTA CGCCGAGGGG CAGCGCCGTT ACGTGGAGAC CTTCTCCGCC 
TACGCCCGGC AGTTCCTCGA GCGCATGGAC CGGCCGCACG TGGAACGCAT CGACGGCGTC 
CCCCCGGCCA TCGCCATCGA CCAGGTCAAT CCGGTGCGCA CGTCGCGCTC CACCGTGGGC 
ACCATGACGG AGCTCTCCGA CCACCTCAAG CTGCTCTTTG CCCGCGCCGC GCAGCCCTAC 
TGCAGCGGCT GCGGTCGCCC GGTGCGCCCG GATACGCCGG AATCCGTGGC CGAGGGGCTC 
CTCGCCGGCG AGGGCGCGGC CCCCTGGCCG CCCGGGACCC GGGTGGCGGT GACCTTCTTC 
GTGGCGGTGC CCGACGGGCT CGACCGGGAC GAGCTGCGCC AGATGCTCTC CAGCCAGGGC 
TACACTCGGA TCTACGAGCG CCCGGGCGGC GTTGAGGTGG TCCAGGATCG TCTGCGGCTC 
GACGCCGAAC GCCGCGGTCG GCTGATCGAG GCGGTGGAGA TCGCCCTCGA CAAGGGGCGC 
GGCCGTTGCC AGGTCTGGGC CCTGGGCGAG GACCGCGAGC CCGCCGGCGA GCCGCGCCGC 
TACTCGGCGA CCTTCCACTG CGCCGGCTGC GATCGCGATT ACCCGCGGCC GACGGCGGAA 
CTCTTCTCCT TCAACTCCCC GGTCGGGGCG TGCGACACCT GCCGCGGCTT CGGTCGGAAC 
ATGGAGATCG ACCCCGATCT GGTCATCCCG GACCCGACCC GCAGCCTGGC CGACGGGGCG 
ATCAAGCCGT TCCGCGGCGG CGCCTCGGTG GAGTGTCAGG AGGATCTGCT GCGCGCCGCG 
CGGCGTCGCG GGGTGGCCGT GGACGTGCCG TGGCAGGAGC TGGACGCGGC GGATCGCCAG 
TGGGTCTGGG ACGGCGAAGA TCGCTGGGGC CGTTCGGGCA GGTGGTACGG GGTGCGCGGT 
TACTTCGACT ACCTGGAGCG CAAGAGTTAC AAGATGCACG TGCGCGTGCA ACTCTCGCGC 
TACCGCACGT ATCGGACGTG CCCGGACTGC CAGGGTGCGC GTCTGGTGCC GGAGGCCCTC 
GACTTCCGCC TCGGGGGGCG GCAGGAGGCC GACGCCGTCC TCGCCCCTGA GCAGCGCTTC 
CGGCCCCGCC ACCTGGAGCT GGACGACGCG GCGCTGGCGG CCCTGCCAGG GCTGACCCTG 
CACGACTTGG CGACCCTGCC CCTGGAGCGG TTGCAGCAGT TCTTCGACGG GTTGGTGCTG 
CCGCCGCCGC TGGACGAGGC GGCGGCCACG GTCCTGGACG AGATCCGCAG CCGGGTCGGC 
TACCTCAACG AGGTGGGCCT CGGCTACCTG ACCCTGGACC GCCAGTCGCG CACCCTCTCC 
GGCGGCGAGG TGCAGCGGAT CAACCTGACC ACCGCGCTGG GGACCTCGCT GGTCAATACC 
CTCTTCGTCC TTGATGAGCC GTCCATCGGC CTGCACCCAC GGGATGTGGA CCGGCTGGTG 
GGGATCCTCC AGCGCCTGCG CGACGCCGGC AACTCGCTGC TGGTGGTCGA GCACGATCCG 
CAGGTGATGG CGGCCGCCGA CCGCATCATC GACATGGGGC CGGGGCCGGG CGAGCGGGGT 
GGCCGGGTGG TCTTCAACGG TGCCCCGGCG GAACTCTATG CGGCGGATTC GGCCACCGCA 
GACTATCTGA CCGGCCGCCG GCGGGTCTCC CGGCGGGATG GTTGCGCCCC GGGTGCGTGG 
GGGGCTGGCG AGGAATTGAG CGAAGCGCGG CTCGCCGGCC GTACGCGCAG GGACGCGCGC 
TCGGCCGGGC CCGACGGCGC GGGGGAGAAG CGGAGCGCGT CCTCGCCGGC CCCCCACCAG 
GCTGCAGCTG CGGACGGCCC CGCGCTGACC ATCCGCGGCG CCCGCGCCCA CAACCTCCAG 
GGGATCGACG TGGCCATCCC GCTGGGCGGC CTGGTCTGTC TGACCGGGGT CTCCGGCTCC 
GGCAAGTCGA CCCTGGCCGA AGACATTCTC TACCGTGGAC TGCTGCGCCA ACAGGGCGAG 
GCCGTTGAAG CCCCCGGCGA ACACGACGGC ATCGACGGCG CGGAGGCGAT CACCGCCGTG 
GCCCTGGTCG ATCAGTCGCC CATCGGCAAG AGTGCCCGCT CCTGCCCGGT CAGTTATACC 
GGCGCCCTGG ATCCGATTCG CAAGCGCTTC GCCGCCGCGC CGCTGGCCCG GGAGCGGGGC 
TACACCGCCG GCGCCTTCAG TTTCAACGCC GGCAATGGCC GCTGCCCGAC GTGCAAGGGC 
TCCGGCTTCG AGCATGTGGA GATGCAGTTC CTCTCCGACG TCTACCTGGC CTGCCCCGAC 
TGCGACGGCC GGCGCTTCCG CGCCGAGGTG CTGGAGGTGC AGGTGGAGGG GCCCGAGGGG 
CGGCGCGCCT CCATCCACGA GGTCCTGGCG ATGACCGCTG ACGAGGCCGT CGAGTTCTTC 
GCGGACAGCC GGGAGGTGGT CCGTCGGCTG GAGCCGTTGC GCGCCGTGGG CCTCGGCTAC 
CTGCGCCTGG GTCAGCCGGT ACCCACCCTC TCCGGCGGCG AGGCCCAGCG CCTCAAGCTG 
GCCGGGCACC TGGCCGAGCG CGGCAAGGCC AAGGGTGGGG AGTCGGGCGC CGGTACGTTA 
CTCATCTTCG ATGAGCCCAC CACCGGCCTC CACTTCAGCG ACTGCCAGGT GCTGCTCGAT 
GCCTTCCAGC GCCTGGTGGA CGCCGGCTAT AGCCTGCTGG TCATCGAGCA CAACCTGGAT 
CTGATCGCCA ACGCCGACTG GATCCTCGAC CTCGGCCCGG AAGGCGGTGA GGGGGGCGGC 
CGATTGCTGG CCAGCGGCAC GCCGGCGCAG CTGGCGGCCC ACGCTACGGA TACCGGCCGC 
GCCCTGGCGG ACGACTGGGC CAGTCAGGCC GTTGCGCCGG ATGAGGGTGC GGGCGCGGCG 
GCCCTGCAGC ACCCGGCCGT TGCCGAGGCG GCGGCGCCTT ACACCGCGCC CGCCCCGGCG 
GCGATCGAGG TGCATCAGGC CCGCGAACAC AACCTGCGCA ACATCGACGT GACCATCCCC 
CGGGATCGGC TGACGGTGGT CACCGGCGTC TCCGGCTCGG GGAAGTCGAC CCTGGCCTTC 
GACATCCTCT TCGCCGAGGG CCAGCGCCGC TACCTGGAAT CGCTCAACGC CTACGCCCGG 
CAACTGGTGC AGCCGGCCTC GCGGCCCGAC GTCGGGGCGG TGACCGGTAT CCCGCCGGCA 
GTGGCCATCG AGCAGCGCAC CAGCCGGGGT GGGTACCGCT CCACCGTGGC GACGCTCACC 
GAAATCTACC ACTACCTGCG CCTGCTTTAC CTGCGCCTCG GGGTGCAGTA CTGCCCGGAG 
TGTCAAGTGG CCATCGAGGC CCAGACGCCG GTGGGGATCG CCGCGCGGCT GCTGCGCGAC 
TACCGGGGTC AGCGGATCGT CTTCTACGCG CCCCTGGTGG TGGCCCGCAA GGGCATCTAC 
AAGGAGCTGG CGGCCTGGGC CGCTGGTCGC GGGTACGAGG CGCTGCGCGT GGACGGTGAG 
CTCCAGCCCA CCGCGCAGTG GCCGCGGCTG GACCGCTACC GGGAGCATGA CATCGATCTG 
CCCCTGGGTA GCCTCGAGGT GCAGCCCGAC GCCGAGGCGG CCCTGCGCGA GCGGCTGGAG 
GAGGCCCTGG ACCACGGCGA CGGGACCGTG CGCATCGCCC CGCAGGACGG GGGTGTCGAG 
GCGGAGCGGG TGTGGTCCAC CCGCCGCGCC TGTCCGGGGT GCGGACAGGG GTTCGCTGAG 
CCGGACCCGC GGCTGTTCTC GTTCAACTCC CGCCACGGCT GGTGCAGCGG CTGCCACGGC 
ACCGGGCTGC TGGTCCGCGA CCCGGACGAG GCCGAGGCAG CGGAGCTCGA GGCGGCGCGG 
GTCTGTCCGG CCTGCCAGGG CGGGCGGCTC AACCCGGTGG CGCGGGCGGT CCGCTTCCAC 
GGGCGGAGCA TCACCGAGGT CACGGCCACC TCGGTGGCCG AGCTGCGGCC CTGGCTGGAG 
GGGCTGAGCC TGGACGACCG CGAGGCCGCC ATCGGGGGCG ACGTCATCGC CGAGGTCCGC 
GCGCGCCTGG CCTTCCTCGA GCGGGTGGGG CTCGGTTATC TGACCCTGGA TCGCGCCGCA 
CCCACGCTCT CCGGCGGCGA GGCGCAGCGC ATCCGTCTGG CGGCGAGCCT CGGTGCGGGC 
CTGCAGGGGG TCTGTTATGT GCTCGACGAG CCGACCATCG GCCTCCACGC CCGGGATAAC 
GCCATGCTCC TCGGGGCGCT GCGCGAACTG GCCGAGGCCG GCAACACCGT GGTGGTGGTC 
GAGCACGACG AGGAGACCAT CCGCGCCGCC GAGCACCTGG TCGATCTCGG TCCCGGGGCC 
GGCCGCCACG GCGGGCGCGT GGTCGCCGAG GGCGATCTGG CGGCGGTGAC CGGCAATGCG 
GACTCCCTCA CCGGTCGGGT CCTGGCCCAC CCGCCGCGCC ACCCGACGCG GGCCCGCCGC 
AGCGAGGCCC CGGCCGCGCA GCTGACGGTC ACCGGAGCCC ACCGCCACAA TCTGCAGCAG 
GTCGATGTGG CGCTGCCGCT CGGCCGCCTG ATCGGCGTCA CCGGGGTCTC CGGCTCGGGC 
AAGTCGAGCC TGGTGCGCGA GGTCATCGAG CCCAGCGTCC GGGCGCTGCT CGGCCGCAAG 
CGTGGCGCGC CGGTGCCCGA GCCGGTGGGA TGCCAGGCAG TGGCCGGTAC CGAGCACCTG 
CGGCGGGTCC TGGAGGTGGA TCAGACGCCC ATCGGTCGCA CGCCGCGCTC CTGTCCGGCC 
ACCTACGTGG GCATCTGGGA TCCCATCCGC CGGCTATTCG CCGGTACGGA AGAGGCGCGT 
CTGCGCGGCT GGGATGCGGC GCGCTTCTCC TTTAACACCA AGGGCGGGCG CTGCGAGGCG 
TGCAGCGGCC AGGGGGTGAA GACGGTGGAG ATGAGCTTCC TGCCCGACGT GAAGGTCCCC 
TGTGAGGTGT GCGGCGGGAC CCGCTTCGAC GAGGAGACGC GCCAGGTTCG CTATGCCGGC 
CACAGCATCG ACCAGGTGTT GGCGCTGAGC ATCGAAGAGG CCCAGGCCTT CTTCAGCGCC 
CATCCGCGCA TCCATCACGT CCTGCGCCTG CTCTGTGACG TGGGGCTCGG CTACCTCAGC 
CTGGGGCAGC CCAGTCCGAC CCTCTCGGGC GGTGAGGCGC AGCGGCTCAA GCTGGTGACC 
GAACTAGCCA AGGCGCGGCC GGTGGACGGC GGACCGGGTC GGGCCAGACA GGCGGCGCCG 
ACGCTCTACC TGCTCGACGA GCCCACCGTG GGGCTGCACA TCGCCGACGT GCAGCGGCTG 
ACCGACGTCT TCCACGCCCT GGTGGACGCC GGGCATACGG TGGTGGTCAT CGAGCACAAT 
CTGGACGTCA TCGCCGAGGC GGATCACGTC ATCGACCTGG GCCCGGAGGG TGGCGATGCC 
GGCGGGTCCG TCGTCGGGTC GGGGGCACCG GAGGCGGTGG CGGCCATGGA TACGCCCACG 
GGTCGGGCGC TGCAGGCCTT CCTTGCCGAG CGGGGGACGC AGGGCGGCTA A 

 

Protein sequence

MREPIRIRGA RQHNLQGLDL DLPAGELIVV TGVSGSGKSS LAFDTVYAEG QRRYVETFSA 
YARQFLERMD RPHVERIDGV PPAIAIDQVN PVRTSRSTVG TMTELSDHLK LLFARAAQPY 
CSGCGRPVRP DTPESVAEGL LAGEGAAPWP PGTRVAVTFF VAVPDGLDRD ELRQMLSSQG 
YTRIYERPGG VEVVQDRLRL DAERRGRLIE AVEIALDKGR GRCQVWALGE DREPAGEPRR 
YSATFHCAGC DRDYPRPTAE LFSFNSPVGA CDTCRGFGRN MEIDPDLVIP DPTRSLADGA 
IKPFRGGASV ECQEDLLRAA RRRGVAVDVP WQELDAADRQ WVWDGEDRWG RSGRWYGVRG 
YFDYLERKSY KMHVRVQLSR YRTYRTCPDC QGARLVPEAL DFRLGGRQEA DAVLAPEQRF 
RPRHLELDDA ALAALPGLTL HDLATLPLER LQQFFDGLVL PPPLDEAAAT VLDEIRSRVG 
YLNEVGLGYL TLDRQSRTLS GGEVQRINLT TALGTSLVNT LFVLDEPSIG LHPRDVDRLV 
GILQRLRDAG NSLLVVEHDP QVMAAADRII DMGPGPGERG GRVVFNGAPA ELYAADSATA 
DYLTGRRRVS RRDGCAPGAW GAGEELSEAR LAGRTRRDAR SAGPDGAGEK RSASSPAPHQ 
AAAADGPALT IRGARAHNLQ GIDVAIPLGG LVCLTGVSGS GKSTLAEDIL YRGLLRQQGE 
AVEAPGEHDG IDGAEAITAV ALVDQSPIGK SARSCPVSYT GALDPIRKRF AAAPLARERG 
YTAGAFSFNA GNGRCPTCKG SGFEHVEMQF LSDVYLACPD CDGRRFRAEV LEVQVEGPEG 
RRASIHEVLA MTADEAVEFF ADSREVVRRL EPLRAVGLGY LRLGQPVPTL SGGEAQRLKL 
AGHLAERGKA KGGESGAGTL LIFDEPTTGL HFSDCQVLLD AFQRLVDAGY SLLVIEHNLD 
LIANADWILD LGPEGGEGGG RLLASGTPAQ LAAHATDTGR ALADDWASQA VAPDEGAGAA 
ALQHPAVAEA AAPYTAPAPA AIEVHQAREH NLRNIDVTIP RDRLTVVTGV SGSGKSTLAF 
DILFAEGQRR YLESLNAYAR QLVQPASRPD VGAVTGIPPA VAIEQRTSRG GYRSTVATLT 
EIYHYLRLLY LRLGVQYCPE CQVAIEAQTP VGIAARLLRD YRGQRIVFYA PLVVARKGIY 
KELAAWAAGR GYEALRVDGE LQPTAQWPRL DRYREHDIDL PLGSLEVQPD AEAALRERLE 
EALDHGDGTV RIAPQDGGVE AERVWSTRRA CPGCGQGFAE PDPRLFSFNS RHGWCSGCHG 
TGLLVRDPDE AEAAELEAAR VCPACQGGRL NPVARAVRFH GRSITEVTAT SVAELRPWLE 
GLSLDDREAA IGGDVIAEVR ARLAFLERVG LGYLTLDRAA PTLSGGEAQR IRLAASLGAG 
LQGVCYVLDE PTIGLHARDN AMLLGALREL AEAGNTVVVV EHDEETIRAA EHLVDLGPGA 
GRHGGRVVAE GDLAAVTGNA DSLTGRVLAH PPRHPTRARR SEAPAAQLTV TGAHRHNLQQ 
VDVALPLGRL IGVTGVSGSG KSSLVREVIE PSVRALLGRK RGAPVPEPVG CQAVAGTEHL 
RRVLEVDQTP IGRTPRSCPA TYVGIWDPIR RLFAGTEEAR LRGWDAARFS FNTKGGRCEA 
CSGQGVKTVE MSFLPDVKVP CEVCGGTRFD EETRQVRYAG HSIDQVLALS IEEAQAFFSA 
HPRIHHVLRL LCDVGLGYLS LGQPSPTLSG GEAQRLKLVT ELAKARPVDG GPGRARQAAP 
TLYLLDEPTV GLHIADVQRL TDVFHALVDA GHTVVVIEHN LDVIAEADHV IDLGPEGGDA 
GGSVVGSGAP EAVAAMDTPT GRALQAFLAE RGTQGG