| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2154 |
|---|
| Symbol | metH |
|---|
| ID | 4709699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 2363867 |
|---|
| End bp | 2367553 |
|---|
| Gene Length | 3687 bp |
|---|
| Protein Length | 1228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639856629 |
|---|
| Product | B12-dependent methionine synthase |
|---|
| Protein accession | YP_001003720 |
|---|
| Protein GI | 121998933 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATC GTAGCCAACA GATTCGCGAC CAGCTTGCCC AACGCATCCT GATCCTCGAC
TGCGGGATGG GCACCGAGAT CCAGAAGTAC CCGCTTGAGG AGGCCGACTT CCGCGGCGAG
CGCTTCAGCG ATCACCCCTC GGAGCTCAAG GGCAACAACG ACCTGCTCGT CCTGACCCGG
CCCGACATCA TTCGCGATAT CACGCGGCAG AACCTGGACG CTGGCGTAGA CATTGTCGAG
ACCAACACGT TCAACTCCCA GGTTCTCTCC CAGGCCGATT ACGGGACCGA ACACCTGGTC
GATGAGCTGA ACATCGAGGC GGCGAAGCTC GCCCGCGCCG TCTGCGACGA GGTCGAGCAG
GAGACCGGCA TCCCCCGCTT CGTCGCCGGC ACCATGGGGC CAACCGGCAA GACGGCCTCC
ATCTCGCCGG ACGTCAACAA TCCCGGCCAC CGCGACATCA CCTTCGACCA GCTGTTCGAA
GCTTACGCGC AGCAGGCCCG GGGCCTCCTC GAAGGCGGCG CTGATCTGAT CCTGATCGAG
ACGGTCTTCG ACACGCTCAA CGCCAAGGCG GCCATCTACG CCCTCGAGGA GGTCTTTGAG
GAATCGGGTC GGCGCCTGCC GGTCATGATC TCCGGCACCA TCACCGATGC CTCCGGCCGG
ACCCTGTCGG GCCAGACGGC GGCGGCCTTC TGGAACTCGG TCCGCCACGC GCGGCCGATC
TCCATCGGCC TGAACTGCGC CCTCGGCGCC GAGGACCTGC GCCCGCACCT GCAGGAACTG
TCCAAGATTG CCGATACGCA CATCTCGACC CACCCCAACG CGGGCCTGCC CAACGAGTTC
GGCGAGTACG ACCAGAGCCC CGAGGAGATG GCCAAGATCG TGCGCACCTT CGCCGAAGAG
GGGCTGATCA ACATCATCGG CGGCTGCTGC GGCACCTCGC CGGCGCACAT CGCCGCCATC
CGCGAGCAGG TCAAGGACTT CGCGCCGCGC CAGGTGCCGG ATCTGGCGCC AGATGTGACG
CGCCTCTCGG GCCTGGAGCC GTGCAACATC GGCAAGGACT CGCTGTTCGT GAACATCGGC
GAGCGCGCCA ACGTCACCGG CTCGGCCCGC TTCCGCCGCC TGATCAAGGA GGGCGACTAC
GAGACCGCCC TTGAGGTGGC CAAGGAGCAG GTGGAGAACG GCGCCCAGAT CATCGACATC
AACATGGACG AGGGCATGCT CGACTCCAAG GATGCGATGA TCGACTTCCT CAACCTGGTC
GGCTCCGAGC CGGACATCTC CCGGGTACCG ATCATGATCG ACTCCTCGAA GTGGGACATC
ATCGAGGAGG GGCTCAAGCG CATCCAGGGC AAGGGCCTGG TCAACTCCAT CTCCCTCAAG
GAGGGTGAGG AGGCGTTCCT GCAGCAGGCG CGCAAGCTCA AGCGCTACGG CGCCGCCGCA
GTGGTCATGT GCTTCGACGA GAAGGGGCAG GCCGATACCT ACGAGCGGCG CCTGGAGATC
GCCGAGCGGG CGTACAACGC GCTGGTCAAC GACGGCTTCG AGCCCGCCGA CATCGTCTTC
GACCTGAACA TCTTCGCCGT CGCTACCGGC ATCGAGGAGC ACAACAACTA CGCCGTCGAC
TTCATCGAGG CGACCCGCTG GGTCAAGGAG AACCTGCCCC ACGCTAAGGT CTCCGGCGGC
CTGTCCAACC TCTCCTTCTC GTTCCGCGGC AACGAGCCGG TCCGCGAGGC CATGCACTCG
GTCTTCCTCT ACCACGCCAT CAAGGCGGGG CTGGACATGG CCATCGTCAA CGCCGGCCAG
ATCGAGGTCT ACGACGAGAT CGACAAGGAG CTGCGCGAGC TCTGCGAGGA CGTCATCCTC
AACCGCCACG AAGACGCCAC CGACCGCCTG CTGGAGCTGG CGGAGCGCTA CAAGGGTCAG
GGTGGCAAGA AGAAGGAAGA GGATCTCGCC TGGCGCGAGG AGCCGGTGGA GAAGCGCCTT
GAGCATGCCC TGATCAAGGG CATCACCGAC TACATCGATG TCGACGTCGA GGAGGCGCGG
CAGAAGCACG ACCGCCCGAT CCAGGTGATC GAAGGGCCGC TGATGGACGG CATGAACACC
GTCGGCGACC TCTTCGGCGA AGGCAAGATG TTCCTGCCCC AGGTGGTGAA GTCCGCCCGC
GTGATGAAGC AGGCCGTCAG CCACCTGCTG CCCTACATCG AGGCCGAGAA GTCCGGCGAC
GACGAGCCCG CCGGCCGGGT GCTGATCGCC ACGGTCAAGG GCGACGTCCA CGACATCGGC
AAGAACATCG TCGCCGTGGT CCTGCAGTGC AACAACTTCG AGGTCCACGA CATCGGCGTC
ATGGTCCCCA CGGAGACCAT CCTGCAGAAG GCCAAGGAGG TGAAAGCCGA CATCATCGGC
CTCTCCGGGC TGATCACCCC GTCCCTCGAC GAGATGATCG GGGTCGCCCA GGAGATGGAG
CGCCAGGGCT TCACCTGCCC GCTGCTCATC GGCGGTGCGA CCACCTCGCG GGTGCACACC
GCGGTGAAGA TCGCGCCGAA TTACTCGGCC CCGAGCATCT ACGTCAAGGA CGCCTCGCGC
GCCGTTGGCG TCGCCTCCAA GCTGGTCAGC GAGACCCAGG CTGAGCCCTA CAAGCAAGAG
CTGGCCGCCG AGTATCAGCA AGTGCGCGAG CAGCACGAGG CCCGGCAGAA GAAGACCAAG
TGGGTCACCT TCGAGCAGGC GAAGCAGAAC GCCACGCCCA TCGACTGGTC CGCCCACCAG
CCCATCCAGC CGCAGAAGCC CGGGGTCCAG GTACTGGACG ACTACCCGCT GGAGGACCTG
GTCGAGCGGA TCGACTGGAC GCCGTTCTTC GCGGCCTGGC AGATGCGCGG CCAGTACCCG
AAGATCCTCG ACGACGAGAA GCAGGGCGAG GAGGCCCGCA AGCTCTTCGA CGACGCCCAG
GCGATGCTCC GGCGCATCAT CGATGAGAAG TGGCTGAGCG CCCGGGCGGT CTTCGGCCTC
TTCCCGGCCA ACAGCACGGG CGAGGACACC GAGGTATACG CCGACGAGCA GCGCAGCGAG
GTGCTGGCGA CCCTCTGCCA CCTGCGTCAA CAGACCGAGA AGGGCGAGGG CAAGCCCCAC
CAGTCGCTGG CCGACTTCAT CGCGCCGAAG GACAGCGGCG TGCTGGACTG GATGGGCGCC
TTTGCGGTCA CGGCCGGCGT CGGCATCGAC GAGCACGTCC GGCGCTTCGA GGAGGCCGGT
GACGACTACA GCGCCATCAT GCTCAAGGCG CTGGCCGACC GACTGGCCGA GGCGTTCGCC
GAAAGCCTGC ACGAGCAGGT GCGCAAGGAC CACTGGGGTT ACGCGGCCGA CGAGAACCTG
TCCAACGAGG ACATGATCAA GGAGCGTTAC CAGGGCATCC GCCCGGCGCC GGGTTACCCG
GCCTGCCCCG ACCACACCGA AAAGGATCGC CTGTGGGAGA TCCTCAACGT CGAGGAGAAC
ATCGGTCTGA CCCTGACCGA GTCCCGGGCG ATGGTCCCCA CCGCCGCCGT TTCCGGCTGG
TACTTCGCCC ACCCGGAGGC GCGCTACTTC GGCGTTGGCA AGATCTTCCA GGATCAGGTG
GAGGATTACG CCAAGCGCAA GGGGATGTCC CGCAAGGAGG CGGAGCGCTG GCTGGGGCCG
AACCTCGGCT ACGAGCCGGA AGACTGA
|
|---|
| Protein sequence | MTDRSQQIRD QLAQRILILD CGMGTEIQKY PLEEADFRGE RFSDHPSELK GNNDLLVLTR
PDIIRDITRQ NLDAGVDIVE TNTFNSQVLS QADYGTEHLV DELNIEAAKL ARAVCDEVEQ
ETGIPRFVAG TMGPTGKTAS ISPDVNNPGH RDITFDQLFE AYAQQARGLL EGGADLILIE
TVFDTLNAKA AIYALEEVFE ESGRRLPVMI SGTITDASGR TLSGQTAAAF WNSVRHARPI
SIGLNCALGA EDLRPHLQEL SKIADTHIST HPNAGLPNEF GEYDQSPEEM AKIVRTFAEE
GLINIIGGCC GTSPAHIAAI REQVKDFAPR QVPDLAPDVT RLSGLEPCNI GKDSLFVNIG
ERANVTGSAR FRRLIKEGDY ETALEVAKEQ VENGAQIIDI NMDEGMLDSK DAMIDFLNLV
GSEPDISRVP IMIDSSKWDI IEEGLKRIQG KGLVNSISLK EGEEAFLQQA RKLKRYGAAA
VVMCFDEKGQ ADTYERRLEI AERAYNALVN DGFEPADIVF DLNIFAVATG IEEHNNYAVD
FIEATRWVKE NLPHAKVSGG LSNLSFSFRG NEPVREAMHS VFLYHAIKAG LDMAIVNAGQ
IEVYDEIDKE LRELCEDVIL NRHEDATDRL LELAERYKGQ GGKKKEEDLA WREEPVEKRL
EHALIKGITD YIDVDVEEAR QKHDRPIQVI EGPLMDGMNT VGDLFGEGKM FLPQVVKSAR
VMKQAVSHLL PYIEAEKSGD DEPAGRVLIA TVKGDVHDIG KNIVAVVLQC NNFEVHDIGV
MVPTETILQK AKEVKADIIG LSGLITPSLD EMIGVAQEME RQGFTCPLLI GGATTSRVHT
AVKIAPNYSA PSIYVKDASR AVGVASKLVS ETQAEPYKQE LAAEYQQVRE QHEARQKKTK
WVTFEQAKQN ATPIDWSAHQ PIQPQKPGVQ VLDDYPLEDL VERIDWTPFF AAWQMRGQYP
KILDDEKQGE EARKLFDDAQ AMLRRIIDEK WLSARAVFGL FPANSTGEDT EVYADEQRSE
VLATLCHLRQ QTEKGEGKPH QSLADFIAPK DSGVLDWMGA FAVTAGVGID EHVRRFEEAG
DDYSAIMLKA LADRLAEAFA ESLHEQVRKD HWGYAADENL SNEDMIKERY QGIRPAPGYP
ACPDHTEKDR LWEILNVEEN IGLTLTESRA MVPTAAVSGW YFAHPEARYF GVGKIFQDQV
EDYAKRKGMS RKEAERWLGP NLGYEPED
|
|---|
| |