| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2150 |
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| Symbol | |
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| ID | 4709726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 2352393 |
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| End bp | 2357324 |
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| Gene Length | 4932 bp |
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| Protein Length | 1643 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639856625 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001003716 |
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| Protein GI | 121998929 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.133009 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACGCCC CGCCACTCAG AGCCCTCGCC ACCGAGCATG TGGTCACCCT GCCTGCCTCG
GCTTCCGTCG GCGAGGCTGT GCGGACCATG CAGGACCACA ACATCCGGGA TGTGGTCGTC
CGCACGCGCG ACGGCTTCCG CCTCTTCCTA TCCACCATGC TACTGCGCCT GGACCATCTG
GGCGCGGACC TGGAGACCCC CCTCGGCAGA CTCGACCTGC CCCGGGCAAC CACCCTGAGC
CCGGACGCCT CGGTGGTCGA CGGGCTGCGG GCCATCCGCA ATCGCGGTGA GCACATCTGC
CTGGTCGATG ACCGCGGGGA ACTAAGCGGG ATCCTGAGCT ATACGGATCT GGCGTCGGGG
TTGGATCCGA ATATGCTGGC GCAAACCCAG AGCATCGGCG AACTCTTCCG GTGGACCCAG
GCGCCGCTGC TGAATCCCGA CGCCACCCTG CGCGGGGCAA TGGCGGCGAT GCGCGAGCAG
GACCAGGAGG CTGCGGTGGT GGTCGATGAC GAGCGCCCCG TCGGCATCCT CACCCAGAAG
GACATCATCA AGCTGCTGGC GGCGGGCACC GACCTCGGCT GCACGCTCGA GGCGTGCATG
TCGTCACCGG TCGAGACGCT CCATGAGCAG GCGAGCATCG CCGAAGCCTT AAGCTTCTGC
CGCCAGCGCA GAATTAAGCG CGTGGTTGTC GTTGATGATG CCGGCCGGCT CACCGGCGTC
ATCGGCCAGA AGGAACTGGT CAACCTCTAC TTCAATCAGT GGTTCGCTTT GCTCCAGGAG
CAGCAGGACG AGCTGGCCCA GCTGAACCGG GAACTGCAGG AGAGCAACCG CGCCCTGGAG
TCGATCACGG AAGAAGTACC GGGCGGGCTC CTGGTCGTCG GCGCCGATGG GCACATCTCC
CGCACCAGTC GGCGCGCGCT CTCGATCCTG AACACCTCCA GCGAGGCGCT GATTGGCCGC
TCCGTTTTCA CGCTTTTGGG CTGCACACCC GGTTCTGGGT GCCCGGGGGA TTTAGCATCC
GCCCCACCTT TACGTTGCCC CTACAGCGGG CCCCCCATCT CCGCCGACTC GTGCGAGCTG
ATCGGCGCTC TGCGTTCCGG CGAGGCCTAC GAGACACGCG ACCTCTTTCA AGCACCGGAG
GGAGAGCCGG TGCTCGTCGA TGTGCGAATC AAGCGCGCCG CCACCGATGG GACAACCATC
CTGCTCTTCC AGGAGGTCTC CAAGGAGGAG CAGAACCGTA CCGAGGCACT GGCTTTCCTC
AACGGCGGAC CGGTGGTCGC CCTCTCCTGG CGGCCGGAAC CGGGCTGGCC GGTGCATTAC
GCATCGGCCA ATGTTGAGCA GGTCCTCGGC TACACCGCGG AGGAGCTCAA GGCACCCGGC
TTCCGATTCG CTGACCTGCT CCACCCCGAG GATACCCAAC GGGTGGACCG GGAAATCCGT
GCTCAACTCG CCGACGGAGC AGCCCATTTC GAACAGCTCT ACCGCGTACG CCACCGCTCC
GGGGGCTACC GCTGGTGCTA CGACTATACG TCTCCGGAAT ACAACGAAGA CGGCCAGCTG
CGTCTGCTCC GGGGCTACAT CCTCGACCGC ACCGAGGAGC AACAAACTCT TGAACAGCTG
ACGCGCAGCC GCGAACGCCT GGCGTTAGCC ACGGAGTCCG CCGGGCTGGG GATCTGGGAC
TACGATCTGA CCAGCGACCA ACTGGACTGG GACGAGGGCA TGTTCCGCCT CTACGGCGTG
TCCTCGGAGG CGTTCGGGGG CACCTTCCAA GACTGGACCC GCACCCTGAT GCCGGAGTCG
CGTGAACGCG CGCAGGCTGC CTTTGAACAG GCAGTGGCAT ACAGCAGCAC GTTCGAGACC
ACCATCTCCA TCCGGCGGCC GATCGACGGT GCGGAGCGCA TCCTCCAGGG CCAGGCTCAG
ATCATCCGGG ACGAGACCGA CCAGGCGGTG CGCGTTGTCG GGGTCAATCG CGACATCACT
GAGCAGGAGA CGAACCGGCG CCGGCTGATC GCCGAGGAGG CGAAATTCCG GGGCCTCTTC
GAGCTCTCCC CGGTCGGCAT TGCCATGAAC GACTTTCAGA CCGGCGAATT CCTGGAGTTC
AACGACGCCA TCAACGAGCC CGCCGGCTAC ACCCGCGAGG AATTCGGCAG GCTCAGCTAC
TGGGATGTCA CGCCAGAAAG CTACATGCCG CAGGAGCAGG AGCAGCTCGA GTCGATGCGG
CGCACCGGGC GCTACGGCCC CTTCGAGAAG GAGTACATCC ACAAGGACGG CCACCGCTAC
CCCGTCCTGC TCCACGGCTT CCGGACCACC ACGCCAGAAG GCCGCGAGGT GATCTGGTCC
ATCATCCAGG ACATCACGGA AACGAAGGCC GCCGAGGCCG CGCTACAAGC GACCAAGGAG
CGTTTCGAGG GGATCTTTCA GAAGACCAGC AGCGGTGTGG CCGTCTATCG ACCCGTGGAC
GGCGGACGGG ATTTCGAGTT CTTGGAGTTC AACCCGGCCT CCGAACGCAT CAATCAGGTC
TCCAGGGAGG CGGTCATCGG GGGCAAGCTG ACCGAACTCT TCCCCGGCGT CGTGGAGATG
GGCCTCCTGG GCGCCCTCCA GCGGGTAGCA GGCACCGGCC ACCCCGAGCA CCTGCCGGTG
ACCGATTACC ACGACGAGCG CATCAGCGGC TGGCGCGAGA ACTACATCTT CCGCCTCTCC
TCGGGCGAAG TCGTGGCGGT CTACGACGAT CTCACCGAGA TCAAGCAAGC CCAGGAGCAG
GCGGAACAAG CGAGCCGTGC AAAGAGCGAG TTCCTCGCCA ACATGAGCCA CGAGATCCGC
ACCCCGTTGA ACGCGGTGAT CGGCCTGAGC CAACTCCTCC TGGAAACCTC CCTGGACAAG
CGCCAGCAGG ACCACTTAAA CAAGGTGCTC AGCTCCTCGC GGATGCTGCT CGGCATCATC
AATGACATCC TCGACTTTTC GAAGATCGAG TCGGGACAGC TGGAGCTGGA TACCCATACC
TTCGATCTCC ATGAGGTCGT CGACCATCTC GCTGCCCTCT TCGGCGAGGT GGGTCACAGG
AAGCAGCTCG AACTCGTCTA CAGCCTGCCG CCCCAAATCC CGTGTGTTCT CGTCGGCGAT
TCGCTTCGCA TCACCCAGGT GCTGACCAAC CTGCTCAGTA ACGCAACCAA GTTCACGCCC
GAGGGCGGCG AGGTCGAAAT GGGCATCCAG CTGGTGGAGC CCCCGAAAGC GGACTCGGTT
ACCCTGCGCT TCTTCGTGCG GGATACCGGC ATCGGCATGA GCGAGGAGCA GCTCGGCCGC
TTGTTCCGGG CCTTTACCCA GGCCGACACC TCGACCACTC GGCGTTACGG CGGTTCGGGT
CTGGGGCTGG TCATCAGCCG GCGCCTGGTG GAGCGGATGG GCGGGGCTCT GGAGGCCACC
TCCAAGCCGG GTCAAGGCAG CACCTTCGCC TTCGAGCTCA CCCTGCCGCT TGGCACTCCG
CAAGCCCCCG CCACGCTCCA CTGCCCGAAA ACGGAAGGCC GCCACGTCCT AATTGTGGAT
GACCACGAGC CGACACGCGA AACCCTCCGC GAGATGCTCC TTCACTGCCA CTTTGAGGTA
GAAGAGGCCA CGAACGGCGA AGAGGCGATC GAGAAGGTGA TCGCCTCCGA GCGTCGGGAC
GACCCCTTTG ATTTCATCCT CATGGACTGG ATGATGCCCG GCGGCATGAG CGGGAGCGAG
ACCTGCCGTG CGCTGGAGGC GTGCCGTCAG TCGGGCGACC TGGCGCAGAC TCGCCCCCCG
GTGCTCATGG TCAGCGCCTA CGACCCGAGC CAGATCGACC TCCCCGAGGG CTTGACCCGC
GAACTCCTGT CCAAACCGAT CACCGCCAAC GTCCTCTACC AGGCCCTGCT GCGCGCGGAG
CGAGGCGATC GTGCCGCCAA CATGGGGCCG GAGTCGATGG GGCACACCCC CAACCTCGCC
GGGTACCGGA TCCTTATCGC CGAGGACAAC GAAACCAACC AGGAGGTGGC TTCGCTGCTG
CTGGAGAAGA CCGGGGCGCA GGTGCAGGTG GTGAACAACG GCGCCGAGGC CCTCGAGGCC
GCCCATGAAG CACCGCCGGA CTTGATCCTG ATGGACCTGC AGATGCCGGT ACTGGATGGC
TTCGAGGCGA CACGGCGGCT CCGGGAGGCG GGCTACGGTG GTCCCGTCCT CGCCCTGTCC
GCAGCCGTTA CCGAAGGCGA CCAACAACGC GCGCGCGCGG CGGGGATGGG CGCCCACATC
GCCAAGCCCA TCGATCGCGA GCAGCTCTAC GCCAGGCTCG CGGATCACCT GTCGCCCTCG
CCGCAGGCCA CGGACGATCC TGACCACGCG GAGGAAACCC CGCCCGGCGG AGGGATACCC
AACCACCTCC CCGGCTTCGA CCCCGCGCGG GGCCTGCGGC TCTTCGGCGG TGACGGGGCG
GTCTACAGAC GAATCCTGCG CGGTTTCCGG CGGCGGATCC GCGACGAGCA CACGGCGCTG
GTCGGGCACC TGCGCCGTGA CGACCGGGGA ACAGCCCTCC GGGACGCCCA TACCCTGAAG
GGCGCTGCTG GCAACGCCGC CGCCGTGCGA CTCCAGGAGC TGGCCGCCCG GATCGAGGAG
ACGCTGGGCA CCGGCGCCGG GGTCGATCAC CGCCTCATCG ATGCCCTGGA GGAGGCCCTG
CAGGAGGCCG AGCAAGCCCT GGAGCCGCTG CTCCCCGCGG CAGCAGCGGC GCCCTCGCCC
GGCTCGCCGA CCGCCGTGGA CGAACTGCGA GCCAAGCTGG CCGCCAGCGA ATGGATCGAG
ACCGAAACCT CGGATGCGGC GCTCGCCTAC CTGCGCAGCC AGGGCCTGGA CTGCGACGAG
CTCGAGACCC GGCTCGAGGC CATGGACTTC GATGGGGCGC TGCAGCTGCT AGAGGCGCTC
ATCGAACGGT AG
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| Protein sequence | MYAPPLRALA TEHVVTLPAS ASVGEAVRTM QDHNIRDVVV RTRDGFRLFL STMLLRLDHL
GADLETPLGR LDLPRATTLS PDASVVDGLR AIRNRGEHIC LVDDRGELSG ILSYTDLASG
LDPNMLAQTQ SIGELFRWTQ APLLNPDATL RGAMAAMREQ DQEAAVVVDD ERPVGILTQK
DIIKLLAAGT DLGCTLEACM SSPVETLHEQ ASIAEALSFC RQRRIKRVVV VDDAGRLTGV
IGQKELVNLY FNQWFALLQE QQDELAQLNR ELQESNRALE SITEEVPGGL LVVGADGHIS
RTSRRALSIL NTSSEALIGR SVFTLLGCTP GSGCPGDLAS APPLRCPYSG PPISADSCEL
IGALRSGEAY ETRDLFQAPE GEPVLVDVRI KRAATDGTTI LLFQEVSKEE QNRTEALAFL
NGGPVVALSW RPEPGWPVHY ASANVEQVLG YTAEELKAPG FRFADLLHPE DTQRVDREIR
AQLADGAAHF EQLYRVRHRS GGYRWCYDYT SPEYNEDGQL RLLRGYILDR TEEQQTLEQL
TRSRERLALA TESAGLGIWD YDLTSDQLDW DEGMFRLYGV SSEAFGGTFQ DWTRTLMPES
RERAQAAFEQ AVAYSSTFET TISIRRPIDG AERILQGQAQ IIRDETDQAV RVVGVNRDIT
EQETNRRRLI AEEAKFRGLF ELSPVGIAMN DFQTGEFLEF NDAINEPAGY TREEFGRLSY
WDVTPESYMP QEQEQLESMR RTGRYGPFEK EYIHKDGHRY PVLLHGFRTT TPEGREVIWS
IIQDITETKA AEAALQATKE RFEGIFQKTS SGVAVYRPVD GGRDFEFLEF NPASERINQV
SREAVIGGKL TELFPGVVEM GLLGALQRVA GTGHPEHLPV TDYHDERISG WRENYIFRLS
SGEVVAVYDD LTEIKQAQEQ AEQASRAKSE FLANMSHEIR TPLNAVIGLS QLLLETSLDK
RQQDHLNKVL SSSRMLLGII NDILDFSKIE SGQLELDTHT FDLHEVVDHL AALFGEVGHR
KQLELVYSLP PQIPCVLVGD SLRITQVLTN LLSNATKFTP EGGEVEMGIQ LVEPPKADSV
TLRFFVRDTG IGMSEEQLGR LFRAFTQADT STTRRYGGSG LGLVISRRLV ERMGGALEAT
SKPGQGSTFA FELTLPLGTP QAPATLHCPK TEGRHVLIVD DHEPTRETLR EMLLHCHFEV
EEATNGEEAI EKVIASERRD DPFDFILMDW MMPGGMSGSE TCRALEACRQ SGDLAQTRPP
VLMVSAYDPS QIDLPEGLTR ELLSKPITAN VLYQALLRAE RGDRAANMGP ESMGHTPNLA
GYRILIAEDN ETNQEVASLL LEKTGAQVQV VNNGAEALEA AHEAPPDLIL MDLQMPVLDG
FEATRRLREA GYGGPVLALS AAVTEGDQQR ARAAGMGAHI AKPIDREQLY ARLADHLSPS
PQATDDPDHA EETPPGGGIP NHLPGFDPAR GLRLFGGDGA VYRRILRGFR RRIRDEHTAL
VGHLRRDDRG TALRDAHTLK GAAGNAAAVR LQELAARIEE TLGTGAGVDH RLIDALEEAL
QEAEQALEPL LPAAAAAPSP GSPTAVDELR AKLAASEWIE TETSDAALAY LRSQGLDCDE
LETRLEAMDF DGALQLLEAL IER
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