| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2126 |
|---|
| Symbol | |
|---|
| ID | 4709830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 2327270 |
|---|
| End bp | 2328796 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639856600 |
|---|
| Product | RNA polymerase, sigma 54 subunit, RpoN |
|---|
| Protein accession | YP_001003692 |
|---|
| Protein GI | 121998905 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.473632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGGACTT CCGCCTGTGA GCGACGGTAT ACGGATGCTG CAAGCACGAC GGACACGGCC
ATGAAGCAGT CGCTGCAGCT ACGCATCGGC CAGCAGCTGA CCATGACGCC CCAGCTGCAG
CAGGCCATCC GGTTGCTGCA ACTCTCCAGC CTGGAGCTGC GCACCGAGAT CCAGCAGGCC
CTGGAGTCGA ACTTCATGCT CGAGCTCGAC GAGGAAGGCG AGCTCGAGCA GCAGGAGCAG
GAGCAACACG AGCAGCAGGA ACAAGAGGCC CGTGAGGACG AGGCCCCGGC CAGCGACCCT
GCCGGCGACG ACATCCCCGA GGACCTACCG CTGGATACCT CCTGGGACGA CATCTACGAC
GGCAGCACGG CGCTGAGCGC GCCGGGCGAC GAGGCGGCCC AACGCGACAC CCTGGACAAC
CGGCCGGCCG CCTCCGACAG CCTGCAGCAG CACCTGCATG CACAGATCGA GCTGGAGGCG
TTCTCCGCGC GCGAGCGCTC CATCGCCGAG GTCATCGTCG ACGCCGTCGG CGACGACGGC
TACCTGACCC AGAGCACCGA CGACCTACTG GCCGGGTGCC CGGAGGATGA GCAGGTTGAC
GCCGAGGAGC TCGAAGCGGT GCTGCAGCGC GTCCAGCGAC TCGACCCGAC CGGCGTCGCC
GCCCGCGATC CCCAGGAAGC GCTGTGCGTC CAGCTCGAGC AGCTGCCCGA AGACACCCCG
TGGCGGGAAG AGGCCCGCCA CGCCCTGCTC GAGCACCTGG GGCTGATCGC CGAGCGGCGA
TACGACGACC TGGGCCGGGC TCTGGGGGTC AGCGACGAGG CCCTCGGCAG CATCCTCGGC
CTGATCCAGA GCCTCGACCC CCGACCCGGC TCGCAGATTA GCGACACCAC GCCCGACTAC
GTCATCCCCG ACGTTCTGGT GGTGCGCCGC GACGGCGCCT GGCAGGTCGA ACTCAACAGC
GAAACCGCCC CCCGCTTGCG CGTCAACGCG TATTACGCCA GCCTGATCCG CAGGGCAGAC
CGGAGCGCGG ACAACCACTG TCTGCGCAAC CACCTCCAAG AGGCGCGCTG GCTGATCAAG
AGCCTGCGCA GCAGGAATGA GACCTTGCTC AAAGTGGCCA GCGCCATCGT GGAACGGCAA
CAGGGTTTCC TCGACCACGG CGAGGAGGCG ATGCAACCAC TGGTCCTGCG CGAGATCGCC
GAGGCGGTGG AGATGCACGA GTCCACCATC TCTCGCATCA CCACCAGCAA GTACATGCAC
ACGCCCCGGG GCACCTTCGA GTTCAAGTAC TTCTTCTCAA GCCACGTGCA GACCAGCGAC
GGCGGAGAGG CTTCGGCAAC GGCGATCCGG GCACGGATCC GCCGACTGAT TGCCGAAGAG
GATCGGGCAA AACCGCTGAG TGACAGCGCG ATTGCGCGTA TCCTTCATGA GGAGGGGATC
CAGGTGGCGC GTCGGACGGT CGCCAAATAC CGGGAGTCCC TGTCCATCGC ATCGTCGGCG
GAGCGCAAGG AGGCCCGGAG GCGCTGA
|
|---|
| Protein sequence | MRTSACERRY TDAASTTDTA MKQSLQLRIG QQLTMTPQLQ QAIRLLQLSS LELRTEIQQA
LESNFMLELD EEGELEQQEQ EQHEQQEQEA REDEAPASDP AGDDIPEDLP LDTSWDDIYD
GSTALSAPGD EAAQRDTLDN RPAASDSLQQ HLHAQIELEA FSARERSIAE VIVDAVGDDG
YLTQSTDDLL AGCPEDEQVD AEELEAVLQR VQRLDPTGVA ARDPQEALCV QLEQLPEDTP
WREEARHALL EHLGLIAERR YDDLGRALGV SDEALGSILG LIQSLDPRPG SQISDTTPDY
VIPDVLVVRR DGAWQVELNS ETAPRLRVNA YYASLIRRAD RSADNHCLRN HLQEARWLIK
SLRSRNETLL KVASAIVERQ QGFLDHGEEA MQPLVLREIA EAVEMHESTI SRITTSKYMH
TPRGTFEFKY FFSSHVQTSD GGEASATAIR ARIRRLIAEE DRAKPLSDSA IARILHEEGI
QVARRTVAKY RESLSIASSA ERKEARRR
|
|---|
| |