| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2021 |
|---|
| Symbol | |
|---|
| ID | 4710382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 2224301 |
|---|
| End bp | 2225491 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 639856494 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001003587 |
|---|
| Protein GI | 121998800 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.159835 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCCGCC TGAGCTGGCG GGGCCTCGAC GCTGGCGGAC GGCGCCTCTC CGGCACCTGC
CACGCCGACT CGCCAAGCGC CGTACATCAC GCCCTGGCCG AACAGGGCGT GGCGGTGACC
GCCGTCCGGC GGGAGCTATG GCGACCGCGC CGGCGGCAGC CGGGCAGCGC CCGACGCGCC
GCCATCCTGC GCCGGCTGGC CTCGGTCCTG GAGGCTGGGG CGCCGCTGAG CGAGGCGCTG
CGGGTCACCG CGGCCCAGGC CCCGGACGCC GCCCTGCGCA ACGGTCTGCG CGGGGTGCGC
TACGCGGTCG AGCGCGGCAC CGACCTGGCC ACCGCCTTCG GCACTGAGTT CCCCGGTCTG
CGCCCGGCCC ACCGCGCCCT CCTGGCGGCC GGCACCTGGA CCGGCGACCT GCCCGCGGCC
CTGGGCAGTG TCGCCGCCGA GATCGAGCGC GAGGCGGCCA TCGTCGCTCA GCTGCGCCGC
GCCCTGACCT ACCCGGCGGT GGTCGCCGGC GCCGCCCTGA CCCTGATCGC CCTGCTGCTG
ACCGCCGTGG TCCCGCGTTT CGCCGGGCTG TTCGAGCAGA GCGGTGAGCC GCTGCCCGCC
CCGACGCGGG CCGTCCTGGC TGCTTCGGAG GGGTTCGCCG TGGTGGCGCC GGCGACCCTG
CTCCTCGGTC TGGTCACCGG CATCGGGCTG ACGGCGGCCC TGCGCCGTCG CCCCGCCTGG
CGCCGGCACG CCGCCGCCGG GCTGGCCCGG ATGCCGTGGC TTGGCACTCT GCTCCTGGAG
GCCGCCCTCA GTCGCTGGTC GGCCACCCTG GCACGCCTGC ACGGGGCCGG GGTGCCCCTG
CTCGACGCCC TGCCCCGCGC CGCGGAGGCG GCCCGCGGGG CCGACCTGGA GCCGCGACTG
GCCCACCTCG GCCAGCGCAT TGGCGCCGGC GAATCCCTGG CCGAGGCCCT GCGAAAGAGC
CTCCCCGAGT CCCGGGAGAT CAGCCAGCTG GTCGCCATCG GCGAGCGCAG CGGGCGGCTC
GAGGAGCTGC TCCACGAGGC CGCTACGCTG CATCAGCAAC GCCTCGAGGC CCGCTTGCAG
CGCGCCGGCG CGCTGCTCGA GCCGGCCCTG ATCCTGCTCC TCGGGGCGAT CACTGCCGGG
GTGGTCGCGG CCCTCTACCT GCCCGTCTTC CGCATGGGCG CGACACTCTA A
|
|---|
| Protein sequence | MARLSWRGLD AGGRRLSGTC HADSPSAVHH ALAEQGVAVT AVRRELWRPR RRQPGSARRA
AILRRLASVL EAGAPLSEAL RVTAAQAPDA ALRNGLRGVR YAVERGTDLA TAFGTEFPGL
RPAHRALLAA GTWTGDLPAA LGSVAAEIER EAAIVAQLRR ALTYPAVVAG AALTLIALLL
TAVVPRFAGL FEQSGEPLPA PTRAVLAASE GFAVVAPATL LLGLVTGIGL TAALRRRPAW
RRHAAAGLAR MPWLGTLLLE AALSRWSATL ARLHGAGVPL LDALPRAAEA ARGADLEPRL
AHLGQRIGAG ESLAEALRKS LPESREISQL VAIGERSGRL EELLHEAATL HQQRLEARLQ
RAGALLEPAL ILLLGAITAG VVAALYLPVF RMGATL
|
|---|
| |