Gene Hhal_2019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_2019 
Symbol 
ID4710384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp2222398 
End bp2223078 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content65% 
IMG OID639856492 
Productrhomboid family protein 
Protein accessionYP_001003585 
Protein GI121998798 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.334479 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACAACG CTGGCCCGCC CACCCTGTCG AACTTCCCGC CGGTCATCGG CTTCCTGCTG 
ACGGCGAACA TCCTGATCTT CCTGCTGCAG ATGGTGATCG GGCCGCATCT GCTGATCACC
GCCTTCGGAC TCTGGCCCCT GACCGGAGGA CTGGATCTGC CTCCGACCAT GGGGCCGGTC
CCCGACTTCC AGATCTGGCA GCTGCTCACG TACGGCTTCC TGCACGGCGG GCTGCTGCAC
CTGTTCGTGA ACCTGTTCGC CATGTGGATC CTCGGCGTGC ACCTGGAGCA CGCCTGGGGC
TCGCGGACCT TCGCCCTCTA CTTCTTCATT TGCGTCATCG GCGCCGGGCT GGTGCAACTG
TTCGTCGCCA CCCAGGCCGC CGCCGACGGC CAGATCTACC CCACTGTCGG CGCCTCGGGC
GGGGTCTTCG GCATCCTGCT GGCCTTCGGC ATGATGTTCC CCAACTACCG GCTGATGCTC
CTCATCCCGC CGATCCCCAT CAAGGCGAAG TACTTCGTCA TCGCCTACGG CGCCTTCGAG
CTGTTCGCCG GCATCACCGG AACGGTGGCG GGCATCGCTC ACTTCGCCCA CCTGGGCGGA
ATGGTGGTCG GCTTCCTGCT GATTCAGTAC TGGCGCGGCA AGCTGCCGAT CAAGCCCCGC
TACCAGCGCT TCTACTGGTA G
 
Protein sequence
MDNAGPPTLS NFPPVIGFLL TANILIFLLQ MVIGPHLLIT AFGLWPLTGG LDLPPTMGPV 
PDFQIWQLLT YGFLHGGLLH LFVNLFAMWI LGVHLEHAWG SRTFALYFFI CVIGAGLVQL
FVATQAAADG QIYPTVGASG GVFGILLAFG MMFPNYRLML LIPPIPIKAK YFVIAYGAFE
LFAGITGTVA GIAHFAHLGG MVVGFLLIQY WRGKLPIKPR YQRFYW