Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_2019 |
Symbol | |
ID | 4710384 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | + |
Start bp | 2222398 |
End bp | 2223078 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639856492 |
Product | rhomboid family protein |
Protein accession | YP_001003585 |
Protein GI | 121998798 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.334479 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACAACG CTGGCCCGCC CACCCTGTCG AACTTCCCGC CGGTCATCGG CTTCCTGCTG ACGGCGAACA TCCTGATCTT CCTGCTGCAG ATGGTGATCG GGCCGCATCT GCTGATCACC GCCTTCGGAC TCTGGCCCCT GACCGGAGGA CTGGATCTGC CTCCGACCAT GGGGCCGGTC CCCGACTTCC AGATCTGGCA GCTGCTCACG TACGGCTTCC TGCACGGCGG GCTGCTGCAC CTGTTCGTGA ACCTGTTCGC CATGTGGATC CTCGGCGTGC ACCTGGAGCA CGCCTGGGGC TCGCGGACCT TCGCCCTCTA CTTCTTCATT TGCGTCATCG GCGCCGGGCT GGTGCAACTG TTCGTCGCCA CCCAGGCCGC CGCCGACGGC CAGATCTACC CCACTGTCGG CGCCTCGGGC GGGGTCTTCG GCATCCTGCT GGCCTTCGGC ATGATGTTCC CCAACTACCG GCTGATGCTC CTCATCCCGC CGATCCCCAT CAAGGCGAAG TACTTCGTCA TCGCCTACGG CGCCTTCGAG CTGTTCGCCG GCATCACCGG AACGGTGGCG GGCATCGCTC ACTTCGCCCA CCTGGGCGGA ATGGTGGTCG GCTTCCTGCT GATTCAGTAC TGGCGCGGCA AGCTGCCGAT CAAGCCCCGC TACCAGCGCT TCTACTGGTA G
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Protein sequence | MDNAGPPTLS NFPPVIGFLL TANILIFLLQ MVIGPHLLIT AFGLWPLTGG LDLPPTMGPV PDFQIWQLLT YGFLHGGLLH LFVNLFAMWI LGVHLEHAWG SRTFALYFFI CVIGAGLVQL FVATQAAADG QIYPTVGASG GVFGILLAFG MMFPNYRLML LIPPIPIKAK YFVIAYGAFE LFAGITGTVA GIAHFAHLGG MVVGFLLIQY WRGKLPIKPR YQRFYW
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