| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1947 |
|---|
| Symbol | |
|---|
| ID | 4710761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 2143899 |
|---|
| End bp | 2145080 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639856420 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001003513 |
|---|
| Protein GI | 121998726 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.309501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGGA CATCGACCGT GGCGGCTGTG GCGGGACTGT TTGCATGGGG CGGTGCGGCG
TCGGCGGCAC AGGCCGGCGA GGTCAGCCTT TATGGGCAGG TCCACGCCGG CCTGCACCAG
TTCGCCTACG AGGACTCTTC CGACGTCACC AAATTCACGG ACCAGGGGCG GACGCGCTGG
GGCGTTTCCG GGCAGCAGCC CCTGGACGAC GAGTGGACGG CCATCGGCCA ACTGGAGTGG
AGCGCCAGCC CGCACCTGGG GGACGACGAT TTTAGTCGAC GGATCAGCTA CGTGGGAGTG
GACAGCCCCT ACGGTGAGCT GGTCGTCGGC ACGGTCCACG CCGCCTACAA GACCCTCGGC
GGCGTGCGCT GGGATCCGCT GGTGGCCACC GAGCTGCAGC AGCGGCGCAC CGGCGGGATG
TCCGGCGGCT CCTTCGGCCA CAACGATTTC GTCAACCGCG CGGTGCAGTA CGTCAGCCCG
GAGATGGCCG GGCTGCAGCT GCACGCCCAG ATCGGGGTGG AGGACGACAA CCAGGACCGG
ACGCTGTCGA GCCCCGATCC GGGTGATGCG GATCAGGACC TGCAGCAGGG CGATGTCATC
CTTGGTGCCA GCTACCTCGG CCTCCCTGAC TGGCACTTCA TCGCCGCGGT GATGCACCTC
GACGAGCGGT TCACCGACGT GGATGACGTG GACGACGGCG ATACCAACTG GAAGGTGGGG
GCCCGCTGGG CGCCGGATGC GTTCTCTCTG GCCTACCAGT ACGAGTCGGT GGAGATCATC
CGCGGGCCCG GGGGCGCCGG CCGGATCGAC AACCTAGTGG GGGATCCCTC AAACCGGGTG
GACGGCGAGA GTACAACGGA TGACGACCCA GCCTTCTACG ACGGCCGCTT CACCGACGCG
GTGGACCACC ACGCGCTGAT CGGGACCTAC CAGCAGGGGC GCAACCAGTG GGTGCTCGCC
CTCGGTCACG CCGACGCCGA TGGCGACGAC GAGGACGTCA GCTCGATCAC CGGCGCCGTG
GTCCATCAGC CCCACGAGGA TTTCCGGGTG TACGCCGGCG TGCAGTACCA GTCCTTCGAC
GATGCGATCG GTAGCGCCGG CGAGGATCCC GACGAGGCCG CCGACGATCA CCTGACCACC
TACGCCATCG GCGCCCGGTA CGACTTCGGG GCGACGTTCT GA
|
|---|
| Protein sequence | MRRTSTVAAV AGLFAWGGAA SAAQAGEVSL YGQVHAGLHQ FAYEDSSDVT KFTDQGRTRW
GVSGQQPLDD EWTAIGQLEW SASPHLGDDD FSRRISYVGV DSPYGELVVG TVHAAYKTLG
GVRWDPLVAT ELQQRRTGGM SGGSFGHNDF VNRAVQYVSP EMAGLQLHAQ IGVEDDNQDR
TLSSPDPGDA DQDLQQGDVI LGASYLGLPD WHFIAAVMHL DERFTDVDDV DDGDTNWKVG
ARWAPDAFSL AYQYESVEII RGPGGAGRID NLVGDPSNRV DGESTTDDDP AFYDGRFTDA
VDHHALIGTY QQGRNQWVLA LGHADADGDD EDVSSITGAV VHQPHEDFRV YAGVQYQSFD
DAIGSAGEDP DEAADDHLTT YAIGARYDFG ATF
|
|---|
| |