Gene Hhal_1928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_1928 
Symbol 
ID4710628 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp2124217 
End bp2126247 
Gene Length2031 bp 
Protein Length676 aa 
Translation table11 
GC content66% 
IMG OID639856401 
ProductTonB-dependent receptor 
Protein accessionYP_001003494 
Protein GI121998707 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4771] Outer membrane receptor for ferrienterochelin and colicins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00435524 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTACAG GACAGCCCAT CGCCAGGGCG CTGCTGAGCG GCGCCGCGGC CCTCCCCCTG 
ATGGCAACAC CGAAGGCTGG ATCGGCCGAG GAACACCCCA CCGTCCTCCC CGACCTGACC
GTCACCGCAG CCACGCGCAC GGAGCGCCAG GTGGAGCGGA CACCGGCGGC CACGGAGATC
CTATCCGGAG ACGACATCCG GCGCAGCGGT GCTGCCATGC TCGATGAGGC GCTTCAGGCA
GAGTCGAGCA TCTACACCGG GGTAGACGGC AACACCTTCT CCATCCGCGG CGGCAACCGC
GATGACATGC TCTATCTCAT CGATGGCCGC CGCATCGCCG GCACCTCATC CCGTAGCAAC
GAACTCAACC GGATCCCGGT GAGCCATGTC GAGCGTATCG AGATCGTTAA GGGGCCCGGC
AGCGTGGTCT ACGGGGCGGA CGCTGTGGCC GGTGTCATCA ACGTGATCAC GCGGCGGCCG
GAGCCCGGCC TGGAAGGCGG CGTCTCCGCC CAGGCCGGAA CGCCAACCGA CGCGGAGGGC
GGTGAGCAGT ACCAAGGGGG CCTCTACCTG GGCGGTGGCA CGCAAGATAC GCGCTTTCGG
CTCTTCGCCG ACGCCCTCGA GCGCGAGGCG TACTCGGAGG AGACAACCAC TCAACCCGAC
GAGGGTGGCG CTCCATCTTC CCAGACCTTC GATCGGGATC TCCGCCCATC CGCCGATGTG
TACACCCTCC GCGGCGGAGT GACCCACTGG TTCACCGATC GCTTCCATAT CGATCTCGAA
GCCGGTTTCC TGACCGAGGA GCGGCAAGAG CGCCTCGTCC AAGGCAGCGG CCCGGGCAAT
ATTGAAGACT TTGCAGCTGT GGAGACCGAG GAGAGCGACC GGCGCGACCT GGCGGCGACG
GCGGAGTGGC TGGCCACCGA AAACCTGGAG CTGCGCTACC AGGCCTACGA GAGCCATTAT
AAGTTTGACC GTGTCCGGTC GCACCTTGCT CCGCAGGACT TCGCCTCGGA CGCAGCAGAT
CGAGACTTCG GCTTCCGCGA GGCGACCTTC ACCGAGCGCG TCAACGACTT CCTGGCACAA
TGGCAGCCGG CGCCCCGCCA CACCGTGCTG ACGGGCCTCG AGCACAAGCA GCAGATCTAC
CAGGACCTCC AGCCAGAAGA CGAACCCGAG CACGACCAGT GGGTAGGCGG CGGCTTCCTG
CAGCACGAGT GGCAAGCCAC GGACCGCCTG GATCTGGTCT ACGGCGCTCG GCATGACGAG
ACCTCCACGG AGGCGGACAG CACCTCGCTT CAGGCCGGAG CTGTTTACCG CCTGGCCCCC
GAGGTCCGAC TGCGCGCCCA GTACGCTGAA GGCTTCAAGC TGCCCGAGCT GCGCTCCTTT
TACGTCGATA CGGAAGATGG CCAGGGGCGC GAAGTTCGCG GCGCCTACGT CATTGACCCG
GATGTTGGTA AGGACGAGAC ACACGAACTC GATCCCGAGA GCAGCCGCAA CTACGAGTTC
GGCATCGCCG GCGACCTGAA TCTGCAAAGA GATATCACGG CGTTCTACGA CATCGGACTC
TTCTACACCG AGTACGATGA TCGCATCGGG CGGGCACCGG GGAACGGTTA CCAAACCTTC
AAAAACGTCG ACAGCGCCCG CGCCCAGGGG GCCGAGCTCA AGCTCGGCGC CGCCTTCGAC
CCGCAACTCG AGCTGACGCT GGCCGCCACC TACCTCGACG CCATCGACCG CGACAGCCGG
GAGACCCTCA CCGATACGCC TGAATGGACA GCGGTAGCCA AGGCGCTGTG GACGCCCACG
GACCCGCTGG AGGTGCAATT ACGCACCCGA TACGTGGATG AAGTGCGCGT TGGCGACGAC
TGGGACAGCG CCTACACCCT CACCGGCCTG GATGTCGCGT ATGCCCCTGC GGCCTGGGAT
GGGCTCAGGC TCCAGGGCGG TATCGAGAAC CTGCTGGATG AGGGCAACGA CTCCTCCCTT
CGAGCCGACC CCGGGCGCTT CGCCCGTGCA GGTGTGCGGT ATGATTTCTA G
 
Protein sequence
MATGQPIARA LLSGAAALPL MATPKAGSAE EHPTVLPDLT VTAATRTERQ VERTPAATEI 
LSGDDIRRSG AAMLDEALQA ESSIYTGVDG NTFSIRGGNR DDMLYLIDGR RIAGTSSRSN
ELNRIPVSHV ERIEIVKGPG SVVYGADAVA GVINVITRRP EPGLEGGVSA QAGTPTDAEG
GEQYQGGLYL GGGTQDTRFR LFADALEREA YSEETTTQPD EGGAPSSQTF DRDLRPSADV
YTLRGGVTHW FTDRFHIDLE AGFLTEERQE RLVQGSGPGN IEDFAAVETE ESDRRDLAAT
AEWLATENLE LRYQAYESHY KFDRVRSHLA PQDFASDAAD RDFGFREATF TERVNDFLAQ
WQPAPRHTVL TGLEHKQQIY QDLQPEDEPE HDQWVGGGFL QHEWQATDRL DLVYGARHDE
TSTEADSTSL QAGAVYRLAP EVRLRAQYAE GFKLPELRSF YVDTEDGQGR EVRGAYVIDP
DVGKDETHEL DPESSRNYEF GIAGDLNLQR DITAFYDIGL FYTEYDDRIG RAPGNGYQTF
KNVDSARAQG AELKLGAAFD PQLELTLAAT YLDAIDRDSR ETLTDTPEWT AVAKALWTPT
DPLEVQLRTR YVDEVRVGDD WDSAYTLTGL DVAYAPAAWD GLRLQGGIEN LLDEGNDSSL
RADPGRFARA GVRYDF