Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1928 |
Symbol | |
ID | 4710628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | + |
Start bp | 2124217 |
End bp | 2126247 |
Gene Length | 2031 bp |
Protein Length | 676 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639856401 |
Product | TonB-dependent receptor |
Protein accession | YP_001003494 |
Protein GI | 121998707 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00435524 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTACAG GACAGCCCAT CGCCAGGGCG CTGCTGAGCG GCGCCGCGGC CCTCCCCCTG ATGGCAACAC CGAAGGCTGG ATCGGCCGAG GAACACCCCA CCGTCCTCCC CGACCTGACC GTCACCGCAG CCACGCGCAC GGAGCGCCAG GTGGAGCGGA CACCGGCGGC CACGGAGATC CTATCCGGAG ACGACATCCG GCGCAGCGGT GCTGCCATGC TCGATGAGGC GCTTCAGGCA GAGTCGAGCA TCTACACCGG GGTAGACGGC AACACCTTCT CCATCCGCGG CGGCAACCGC GATGACATGC TCTATCTCAT CGATGGCCGC CGCATCGCCG GCACCTCATC CCGTAGCAAC GAACTCAACC GGATCCCGGT GAGCCATGTC GAGCGTATCG AGATCGTTAA GGGGCCCGGC AGCGTGGTCT ACGGGGCGGA CGCTGTGGCC GGTGTCATCA ACGTGATCAC GCGGCGGCCG GAGCCCGGCC TGGAAGGCGG CGTCTCCGCC CAGGCCGGAA CGCCAACCGA CGCGGAGGGC GGTGAGCAGT ACCAAGGGGG CCTCTACCTG GGCGGTGGCA CGCAAGATAC GCGCTTTCGG CTCTTCGCCG ACGCCCTCGA GCGCGAGGCG TACTCGGAGG AGACAACCAC TCAACCCGAC GAGGGTGGCG CTCCATCTTC CCAGACCTTC GATCGGGATC TCCGCCCATC CGCCGATGTG TACACCCTCC GCGGCGGAGT GACCCACTGG TTCACCGATC GCTTCCATAT CGATCTCGAA GCCGGTTTCC TGACCGAGGA GCGGCAAGAG CGCCTCGTCC AAGGCAGCGG CCCGGGCAAT ATTGAAGACT TTGCAGCTGT GGAGACCGAG GAGAGCGACC GGCGCGACCT GGCGGCGACG GCGGAGTGGC TGGCCACCGA AAACCTGGAG CTGCGCTACC AGGCCTACGA GAGCCATTAT AAGTTTGACC GTGTCCGGTC GCACCTTGCT CCGCAGGACT TCGCCTCGGA CGCAGCAGAT CGAGACTTCG GCTTCCGCGA GGCGACCTTC ACCGAGCGCG TCAACGACTT CCTGGCACAA TGGCAGCCGG CGCCCCGCCA CACCGTGCTG ACGGGCCTCG AGCACAAGCA GCAGATCTAC CAGGACCTCC AGCCAGAAGA CGAACCCGAG CACGACCAGT GGGTAGGCGG CGGCTTCCTG CAGCACGAGT GGCAAGCCAC GGACCGCCTG GATCTGGTCT ACGGCGCTCG GCATGACGAG ACCTCCACGG AGGCGGACAG CACCTCGCTT CAGGCCGGAG CTGTTTACCG CCTGGCCCCC GAGGTCCGAC TGCGCGCCCA GTACGCTGAA GGCTTCAAGC TGCCCGAGCT GCGCTCCTTT TACGTCGATA CGGAAGATGG CCAGGGGCGC GAAGTTCGCG GCGCCTACGT CATTGACCCG GATGTTGGTA AGGACGAGAC ACACGAACTC GATCCCGAGA GCAGCCGCAA CTACGAGTTC GGCATCGCCG GCGACCTGAA TCTGCAAAGA GATATCACGG CGTTCTACGA CATCGGACTC TTCTACACCG AGTACGATGA TCGCATCGGG CGGGCACCGG GGAACGGTTA CCAAACCTTC AAAAACGTCG ACAGCGCCCG CGCCCAGGGG GCCGAGCTCA AGCTCGGCGC CGCCTTCGAC CCGCAACTCG AGCTGACGCT GGCCGCCACC TACCTCGACG CCATCGACCG CGACAGCCGG GAGACCCTCA CCGATACGCC TGAATGGACA GCGGTAGCCA AGGCGCTGTG GACGCCCACG GACCCGCTGG AGGTGCAATT ACGCACCCGA TACGTGGATG AAGTGCGCGT TGGCGACGAC TGGGACAGCG CCTACACCCT CACCGGCCTG GATGTCGCGT ATGCCCCTGC GGCCTGGGAT GGGCTCAGGC TCCAGGGCGG TATCGAGAAC CTGCTGGATG AGGGCAACGA CTCCTCCCTT CGAGCCGACC CCGGGCGCTT CGCCCGTGCA GGTGTGCGGT ATGATTTCTA G
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Protein sequence | MATGQPIARA LLSGAAALPL MATPKAGSAE EHPTVLPDLT VTAATRTERQ VERTPAATEI LSGDDIRRSG AAMLDEALQA ESSIYTGVDG NTFSIRGGNR DDMLYLIDGR RIAGTSSRSN ELNRIPVSHV ERIEIVKGPG SVVYGADAVA GVINVITRRP EPGLEGGVSA QAGTPTDAEG GEQYQGGLYL GGGTQDTRFR LFADALEREA YSEETTTQPD EGGAPSSQTF DRDLRPSADV YTLRGGVTHW FTDRFHIDLE AGFLTEERQE RLVQGSGPGN IEDFAAVETE ESDRRDLAAT AEWLATENLE LRYQAYESHY KFDRVRSHLA PQDFASDAAD RDFGFREATF TERVNDFLAQ WQPAPRHTVL TGLEHKQQIY QDLQPEDEPE HDQWVGGGFL QHEWQATDRL DLVYGARHDE TSTEADSTSL QAGAVYRLAP EVRLRAQYAE GFKLPELRSF YVDTEDGQGR EVRGAYVIDP DVGKDETHEL DPESSRNYEF GIAGDLNLQR DITAFYDIGL FYTEYDDRIG RAPGNGYQTF KNVDSARAQG AELKLGAAFD PQLELTLAAT YLDAIDRDSR ETLTDTPEWT AVAKALWTPT DPLEVQLRTR YVDEVRVGDD WDSAYTLTGL DVAYAPAAWD GLRLQGGIEN LLDEGNDSSL RADPGRFARA GVRYDF
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