Gene Hhal_1883 details

Gene Information

• Locus tag: Hhal_1883
• ID: 4710852
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: -
• Start bp: 2063423
• End bp: 2065471
• Gene Length: 2049 bp
• Protein Length: 682 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 639856356
• Product: TonB-dependent receptor
• Protein accession: YP_001003449
• Protein GI: 121998662
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG1629] Outer membrane receptor proteins, mostly Fe transport

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTGTCGA TCATGACTTC GGCTGCGATC GCGTGGTCGA CAGGAGCTTT TGCGGATGCG 
TTGCCGCCGG TGACGGTGGT GAGTGACCCG CCCTCAGAAC CGTCTGTCCG GGCCGGTGAC 
CGGGTGACCG CGCCTGGCGA TCGCAAGGGA CCTCGGCGGC ATGGGCTTGA AGCGGGCGCG 
TTGGAGCGTT TAAACGCGGA TCGCCTGGAG GAACTCGCCG GTGCCGTCCC CGGGGCGCAT 
GCCGGACGCG AGGAAGGCGG GCTCGGTACG GCCTGGACCC TCCGCGGTTT CGAGGTCACC 
ACGCCGCAGT GGAACGGGCT GACCGATATC GATCGGCTCT TCGTCCGCGA CCCCTACACC 
GTCGAGCAGG TCGAGGTGGT TCCCGGTCCC GACGCCATCC TCCAGGGGGT GACGTCGCCT 
GGCGGCTCCA TCCGTTACCA GGGCAAGCGG CCCGAGTACA CGCCCGCCCA CGAGGTGGGC 
GTGGAGGCGG GGTACCCTGA CCACCGCCGG GTGGTGGCCG ATACCACTGG GCCCGTTGGG 
GACCACCTGG CCTACCGCCT GACCCTTGCC GGCCAGGACG GCGAAAGCCG GCCCGCCGAG 
CAGCAGACCG AGCGGCTCCA CGCCCTTGCC GGCCTGGCGT GGCGCTACCA CGCCGACGGC 
GAGCTCCGGC TCGAGCACGG GTTCCAGCGC AATCGGCAGC CCTACGACAT GGGCACCGTC 
TGGCTGGAGG ATGGCCCGGT CTACGACACC CCGCTGCACA GCCCGGATCA GGAGAGTGAC 
CGGCGCTACC AGCGCACGGC GCTCTACTGG GACCACGCGC TGACCGAGGG TCTCGCGGTC 
TCCCTGCGCG CTGCGCACTC GGAGGTGGAG CGGGAGGAGG CGATCGTGGG GTTCTACTCC 
TTTGGCCTAT TGCCGGCGCC GGAGCCGGTG GCCGGGTACG CGGCCCGGAT CGACGATCAG 
TACACCCAGG ACGATCTACG GCTCCAGCTC GAGTATGAAC ACGATACCGC CCGGACTCGG 
TGGCACTGGG TGGTCGGTGG GGACATGCAT CGGCAGGAGA TCGACTTCCG GCGCGATCAG 
CTTCGCTATT GGGATGACGA TGACGACTGG TGGCAACAGT TCAGTGTCGA TCCCAGAGAT 
CCAGATTTTG CGGGCATCGA ACTGTCCAAC CTGGCCCTGA CGCGGCAGGA GCGGCCCGAG 
GAGACCGACC GCTACGGGGC CTATCTCGCC AACCGGCTGG AGGTGGGGGC GCGGTGGGCC 
TTCACCGCCG GTGTGCGTCA TACCGAGTAC GAGGTTCGTA AGGCGAATGA AGACGATCCG 
GAACTGGCGA TTGCTGCCGA GGACCGGGCG CTCACCTGGC AGGCCGGGCT GCAGCTGGAC 
GTGACCCGTC GCGCGCAGTT GTTCGCCCAT GCGGGCACCG GCATACGCCC CAACGAGGGC 
ATCGACCGAC ACGGCGACTT CCTCCCCTCG CGCGAGAGCG CCGTCACTGA GCTGGGGTGG 
CGGTATGCGC CGGATCGCCG GCAGCAGCTG GTGGTGGCCG CCTACCACCT GCGGGAGGAG 
AACCTGCCGC AGGAGGATGA GGCGTATTCG GAGGAGGACT ACTTCCGGGC TGTCGGCGAG 
GTCGAGGTGG AGGGGGTGGA GGCCCGCTAC GTCCTGGACA CCGGGGCTTG GCGGATCGCT 
CCCAACGCCA CCCTCCAGCG CAGTCGCAAC TACGACGAGG ATGAGCCGGC GGAGCGGGGG 
AACCATTTTG AAGGGGTGCC GCGCCACCTG GCTGGTCTGG AGGTGGATCA CGATCTGGGC 
GCCTACACCC CCCTGGCGCT CCGTCTCTGG TACTGCGCCG AGTATGTCGG CGGCTGGTAC 
CTGGACGATG CCAACGACTA CCGCACCGAC GGTTACACCC TGCACAGCCT CGGGGCGATT 
TACCAGTGGC CGGAGGGTAC GCGGCTCGAT CTGCGCGTGC GCAACGCCAC CGATGAGCGG 
TACCTGGCGG CACCGCGGGT GCAGGGGGAG CGCCGCGAGG TGCGCCTCGG GTTAAGCCGA 
CGGTTCTGA 

 

Protein sequence

MLSIMTSAAI AWSTGAFADA LPPVTVVSDP PSEPSVRAGD RVTAPGDRKG PRRHGLEAGA 
LERLNADRLE ELAGAVPGAH AGREEGGLGT AWTLRGFEVT TPQWNGLTDI DRLFVRDPYT 
VEQVEVVPGP DAILQGVTSP GGSIRYQGKR PEYTPAHEVG VEAGYPDHRR VVADTTGPVG 
DHLAYRLTLA GQDGESRPAE QQTERLHALA GLAWRYHADG ELRLEHGFQR NRQPYDMGTV 
WLEDGPVYDT PLHSPDQESD RRYQRTALYW DHALTEGLAV SLRAAHSEVE REEAIVGFYS 
FGLLPAPEPV AGYAARIDDQ YTQDDLRLQL EYEHDTARTR WHWVVGGDMH RQEIDFRRDQ 
LRYWDDDDDW WQQFSVDPRD PDFAGIELSN LALTRQERPE ETDRYGAYLA NRLEVGARWA 
FTAGVRHTEY EVRKANEDDP ELAIAAEDRA LTWQAGLQLD VTRRAQLFAH AGTGIRPNEG 
IDRHGDFLPS RESAVTELGW RYAPDRRQQL VVAAYHLREE NLPQEDEAYS EEDYFRAVGE 
VEVEGVEARY VLDTGAWRIA PNATLQRSRN YDEDEPAERG NHFEGVPRHL AGLEVDHDLG 
AYTPLALRLW YCAEYVGGWY LDDANDYRTD GYTLHSLGAI YQWPEGTRLD LRVRNATDER 
YLAAPRVQGE RREVRLGLSR RF