| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1875 |
|---|
| Symbol | |
|---|
| ID | 4710711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 2049334 |
|---|
| End bp | 2050854 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639856348 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_001003441 |
|---|
| Protein GI | 121998654 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGGT GTAAGCCCGA TTGGCGCGGG CCCCTGGGGA GCCTGCTCGT TGGCGGTGTT
CTAGTGGTGC TGGCCGGCCG CGCGGTGGCC GAGGCCGATG ACACCTGGGG GCTGAGTCTC
GAGGAAGCGG TCTACAGCGC CGTCGAGCAC AATCCGGCCC TCCAGGCCGA GCGCCTGGGG
CCGGTGGTCG CCGGTACCTT CGAGCAGATC GAGCTGGGGG CGTTCGATCC GGAGGTCTTT
GTCGAGGGCG ACTACCGCCG CCGGCAACTG GAGCAGATCG GCCTTGAGAC GGGGCAGGCG
CGGGATACCG ACCGTACCGA TGTGGGCTTA TCGGTCGGTA TTGGTCAGCG GCTGCCCATC
GGCGCTGACT GGCGCCTGTC TGCGGTCCAG GATTTTGACG AGGATCGCGC CAGTGGTCAG
GAGCTGCACA CCAGTGGTCT GCAGCTGCGG CTCAGCCAGC AGCTTCTCCA GGGCCGGGGG
CGCGAGGTCA ACCTGGTCAG CCTGCGCCAG GCGGAGCTGG AGACCCTGCG CTCCGAGCAC
GAGCTGCAGG GCTTTGCCCA GCAGCTGGTG GCGGACGTCG AGGCGGCGTA CTGGGATTTC
GCCCTTGCCG ATCGCGAGAT CGCCATCTTC GAGGAGTCCC TGAATCTGGC CGAGGAAGAG
GTGCAGCGGG CCGAGGAGCG GGTCCGTTTG GGGGATCTGG CCGAGACCGA GTTGGCGCCG
CTGGAGTCCG AGGCCGCGCT ACGCCGTCAG GAGCTGATCG ATGCCCGCAG CCGGCGCGAG
GCGGCGCGGC TGGAGTTGCT GCGGCTGATC GGCAGCGAGG ATCAGCTCCG GGAGGATCGC
GAGATCGAGC CGCTCACCGA CCCGGAGCGC TTGGTGGTCG AGCCGGATCC GGTGGCCGAG
CATCTGGCCC TGGCCCTGGA GCGGCGCCCG GAACTCAATC AGGCCCGGCT GGACCTGCGC
AGCGAGAACC TGCAGGTTAC CCAGACGCGG AATGGCTTGT TGCCCGAGCT GGAGTTGTTT
ATCCAGCTGG GTAGCAGTGG TTACGCCGAC TCCTTCAGCG GGGCGCCCCG AGATCTGGAC
GGCTCCAGTT ACGACGCCCA GGTGGGCATC TCCCTGGGCC GCTCACTCAC CAACCGGGCC
CCCGAGGCCG AGCACCGCCA GGCGCTGACG CTTCGCAACC AGGCCAATCT GAGTCTGAGC
AACATGGCCC GGCTGGTCAG GCACGATGTC CGCACAGCGC ACCTGGAGTT GCAGCGGGCG
GCTGCACAGA TCGAGGCCAG CGGTGCCACC CGCCGCGCCC GGGAGGAGCA GGTGCGCGCG
GCGGACGAGC GCTTCCGGGC CGGGGATGCC ACGGCCTTCG CCGTGGTCCA GGCCCAGCGT
GATCTGCTCG AGAGCCGCAT CAACGAGGCA GCGGCGCAGG CGGAGTACCG CACGGCGTTG
GTCGAGCTCT ACCGACTGGA TGGCACGTTG CTCGAGCGTC GCGGCATCCA GTCGGCGACC
GACGATGTCG TCCCGCGCTG A
|
|---|
| Protein sequence | MRRCKPDWRG PLGSLLVGGV LVVLAGRAVA EADDTWGLSL EEAVYSAVEH NPALQAERLG
PVVAGTFEQI ELGAFDPEVF VEGDYRRRQL EQIGLETGQA RDTDRTDVGL SVGIGQRLPI
GADWRLSAVQ DFDEDRASGQ ELHTSGLQLR LSQQLLQGRG REVNLVSLRQ AELETLRSEH
ELQGFAQQLV ADVEAAYWDF ALADREIAIF EESLNLAEEE VQRAEERVRL GDLAETELAP
LESEAALRRQ ELIDARSRRE AARLELLRLI GSEDQLREDR EIEPLTDPER LVVEPDPVAE
HLALALERRP ELNQARLDLR SENLQVTQTR NGLLPELELF IQLGSSGYAD SFSGAPRDLD
GSSYDAQVGI SLGRSLTNRA PEAEHRQALT LRNQANLSLS NMARLVRHDV RTAHLELQRA
AAQIEASGAT RRAREEQVRA ADERFRAGDA TAFAVVQAQR DLLESRINEA AAQAEYRTAL
VELYRLDGTL LERRGIQSAT DDVVPR
|
|---|
| |