| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1863 |
|---|
| Symbol | |
|---|
| ID | 4709071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 2036462 |
|---|
| End bp | 2038138 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639856335 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_001003429 |
|---|
| Protein GI | 121998642 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0569] K+ transport systems, NAD-binding component
[COG4651] Kef-type K+ transport system, predicted NAD-binding component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.683129 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACA TCCCCGCTGT CGAAGGACTG TTCAACCAAT TCGCCATCCT GCTGCTGGTG
GCAGCCGTCA TCGGCTTTAT CGGAACCCGA CTCAAGCAGC CGCTGATCGT CTCGTTCATC
GCCGTCGGCA TCCTGGTCGG GCCGTCTGCC CTGGGGTGGG TGGACGGACA CGAGCCGATG
ATGGATCTGC TGGCCGAGAT CGGCATCGCC CTGTTGCTGT TCATCGTCGG TCTAAAGCTC
GATCTACACC TGATCCGGAC CATGGGGCCG GTGGCCTTGG CGACCGGGCT AGGGCAGGTG
CTGTTTACCT CGGCGGTGGG GTTCCTGATC GCGCTGGCTC TGGGGATGGA GCCGATCACG
GCGCTCTACG TGGCGGTCGC GCTGACCTTC TCGAGCACCA TTATCATCGT CAAGCTGCTC
TCCGATAAGA AGGAGATCGA CGCCCTGCAC GGGCGGATCG CCATCGGCTT TCTGATCGTG
CAGGACATCT GTGTAGTCCT GGCCATGATC CTGATCACCT CGCTGGCCGC TGGCGAGGGG
GATGCCAACG TGGCCATGGA GGTGGGGCAG GTGCTGCTCA CCGGTGTGGC CATGCTGCTG
TTCGTGGCCC TGATGATGCG CTATGTGCTG CCGCCGCTTC TCAACATGCT GGCGCGTACG
CCGGAGCTCT TGGTGCTTTT CTCCATCGCC CTGGCGGTGG CCATGGCTAC CGGCGGCGAT
CTGATGGGCT TCAGCAAGGA GGTGGGTGCC TTCCTGGCGG GTATTGCCAT TGCCTCGACG
CCCTACCGGG AGGCGGTGGC CTCGCGCCTG ACGGCGCTGC GGGATTTCCT GCTGCTGTTC
TTCTTCATCT CGCTGGGCGC GCAGCTGGAT ATGGGCACCA TCGGTGATCA GGTGGTGCCG
GCGCTGATCT TCTCGACCTT CGTACTCATC GGCAACCCGA TCATCGTGCT GATCATCATG
GGGTACATGG GGTACCGCAA GCGGACCGGT TTCCTGGCCG GACTGACGGT GGCGCAGATC
TCCGAGTTCT CGTTGATCCT GGCCGCCCTG GGCATGTCGG TGGGTCACAT CGGGCAGGAC
ACCATGGGCC TGGTCACGCT GGTGGGCCTG ATCACCATCG GTGCCTCCAC CTACATGATC
CTCTACTCCA AGCCGCTCTA CGAACGCCTG GCGCCGCTTC TGTCGGTCTT CGAGCGCAAG
GTCCCGCACG CCGAGATCGC CCTGGACAGC CAGCCGGATC AGCACTATGA AGCGGATGTG
GTCATCTTCG GATTGGGCCG CTACGGCCAC CAGCTGGCCA AGAACTTCAA GGCCCGGGGC
TGGCGAGTGC TGGGCGTGGA CTTTGACCCG ACGCTGGTGG GACAGTGGCG GGAAGAGGGG
CACATGGCCC ATTACGGAGA CGCCTCCGAC CCGGAGTTCC CGCAGACCCT GCCCCTGGCG
CGGGCGCGGT GGGTGATCAG TACGGTGCCC GACCGGGATA TCGGCGCGAC GCTGATCAGC
GCCCTGCGGA GTGCCGGTTA TCAGGGCAAG GTGGCGGTGA CTTCCCACTC GCGGATGGAC
GCCGATTATC TGCGGGGACA GGGGCCTGAT CGCATCCTGT TGCCCTTCGT CGATGCCGCG
GAGATGGCCG TGGCCGGAAT CACCGGGGGG CAGGAGAGAG GAGGGGGCGG ACGATGA
|
|---|
| Protein sequence | MADIPAVEGL FNQFAILLLV AAVIGFIGTR LKQPLIVSFI AVGILVGPSA LGWVDGHEPM
MDLLAEIGIA LLLFIVGLKL DLHLIRTMGP VALATGLGQV LFTSAVGFLI ALALGMEPIT
ALYVAVALTF SSTIIIVKLL SDKKEIDALH GRIAIGFLIV QDICVVLAMI LITSLAAGEG
DANVAMEVGQ VLLTGVAMLL FVALMMRYVL PPLLNMLART PELLVLFSIA LAVAMATGGD
LMGFSKEVGA FLAGIAIAST PYREAVASRL TALRDFLLLF FFISLGAQLD MGTIGDQVVP
ALIFSTFVLI GNPIIVLIIM GYMGYRKRTG FLAGLTVAQI SEFSLILAAL GMSVGHIGQD
TMGLVTLVGL ITIGASTYMI LYSKPLYERL APLLSVFERK VPHAEIALDS QPDQHYEADV
VIFGLGRYGH QLAKNFKARG WRVLGVDFDP TLVGQWREEG HMAHYGDASD PEFPQTLPLA
RARWVISTVP DRDIGATLIS ALRSAGYQGK VAVTSHSRMD ADYLRGQGPD RILLPFVDAA
EMAVAGITGG QERGGGGR
|
|---|
| |