Gene Hhal_1821 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_1821 
Symbol 
ID4711252 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp1995301 
End bp1995888 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content71% 
IMG OID639856291 
ProductTfp pilus assembly protein FimT-like protein 
Protein accessionYP_001003387 
Protein GI121998600 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4970] Tfp pilus assembly protein FimT 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.071899 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTACGGAA TTCACCCTCG ATCACCGCGG CGAACGGGGC AGTGCCCCCG GGGCCGCGGA 
GGTCTGCTGG GGCGACTGAC CCCGGGATTC ACGCTGACCG AGCTGCTGGT GGCGCTCGCC
CTGATTGCCG GGCTGACCGC TGTGGCGGCG CCACAGTTGG GTGCCGGTGT GGATGAGGTC
CGCGCTTGGG TCTGGCAGCG GGAACTCCTC GCCGGGCTGG AGCGGGCACG CATCGAGGCA
CTGGACCAAG GCGAGACGGT CACCTTGTGC GGCGGCACCC CGCAGGCCGG ATGCGATGCG
CAGGGCTGGG ACGACGGCTG GATCCTGTTC CGCGGCGAGG CTGCATCCGG CCAGGCGCCG
GGACCGGAGC AACTCCTGGC CCGGGGGCGT GGGATCGGGC CGGGTCACCG GGTCGTGTCG
GACAGCGGGC GGGAAGACTT CCGGTTTCAG CCTGATGGCT GGCTATCGCG CATTTACGGC
GACACCCTGA GGCTTTGTCG CGACGGCGCG GCAGTGGTCG CCATCCGTGT GGCTAGCACC
GGCCGGGCAA GAGCGGACAA CGATCAGCGG GGTGAGCCCT GCGATTGA
 
Protein sequence
MYGIHPRSPR RTGQCPRGRG GLLGRLTPGF TLTELLVALA LIAGLTAVAA PQLGAGVDEV 
RAWVWQRELL AGLERARIEA LDQGETVTLC GGTPQAGCDA QGWDDGWILF RGEAASGQAP
GPEQLLARGR GIGPGHRVVS DSGREDFRFQ PDGWLSRIYG DTLRLCRDGA AVVAIRVAST
GRARADNDQR GEPCD