Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1696 |
Symbol | secD |
ID | 4709934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | - |
Start bp | 1852345 |
End bp | 1854201 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639856163 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001003262 |
Protein GI | 121998475 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGAATCGCT ATCCGCTCTG GAAATACCTG CTGGTGGTCG CCGTCCTGGT GGTCGGCGGC CTCTTCGCGC TGCCCAACCT CTTCGGTGAG GATCCCTCGG TGGTGATCAC CACCGGCGAC GACGAGGTAC CGAGCGAGGA AGTCCAGTCC GACGTCCTCG GCTTCCTCGA GGAAGAGGGC TACAAGCCGC TCTCCGCCGA GGTACTGGAG GGGCAGTGGG TGCTTCGCTA CGGCTCCACC GACGAGCAGA TGCGGGCCTC GGACCTGATC TCGGCCAAGC TCGACCGAGA GTACTCCGTG GCCATGACGC TGGTGCCGGC GACCCCGCAG TGGCTGCGCG CCATGGGGGC GGAACCCATG TTCCTCGGCC TTGATCTGCG CGGCGGCGTG CACTTCCTGC TTCAGGTCGA TATCGACGCC ATGGTCGGCG AGACCATGGA GGGGCACCAG CAGGATATCC GGACGCTGTT CCGGGAGGAG CGGATTCGCT TCTCGGCGCT GGAGGTGACC GACGAGCAGC AGATCCGCAT GGCGTTTGCC GACACGGACC TGCGCGCGCG GGCCCTGGAG GCGCTCGAGG AGCATATCGA GGGCCTGAAC TACAGCGAGG AAGAGGACGA AGACACCTAC ACCCTGATCG CCTCCATGGA CGAGGAGGAG CTTCAGGAGA TGAAGGACCT GGCGGTCCAG CAGAACATCA CCACGCTCCG CAACCGCGTG GACGAGCTGG GTGTCGCCGA GCCGGTGATT CAGCGCCAGG GCGCGGATCG CATCGTGGTC CAGCTGCCCG GTATTCAGGA CCCCGGGCAG GCCAAGGAGA TCCTCGGCGC CACAGCGACC CTGGAGTTTC GGTTTGTCGA TCACGCCAAC TTCCCCTTCA CCGGCGATCC GGACGATCCG CCGGAAGGCT CCGAGGTCTT CCCTCAGCGC GATGGCGGCT ATGTCGCGCT CGAGCGCCAG CGCATCCTCT CCGGCGATCG CATCATCGAT GCCTCCTCCG GGTTCGATCA GGAGAGTGGT TCGCCCGAGG TGAACATCCG ACTGTCCGGA ACCGGCGGGC GCATCATGAA CCGGGCCACC CGGGACCGGG TCGGCGACCA TATGGCGGTG CTCTTCCAGG AGCGGATCTC CGAGACGCAG ATGGTCGACG GCGAGCCGGA GCGGGTGATC CGCGAGCTTG AGGAGGTCAT CTCGGTCGCG CGGATCCGCG AGGGGCTGGG TAGTCGCTTC CGCATCACCG GGCTCGATTC CAGCCAGGAG GCCAGTAACC TGGCCCTGCT GCTGCGCGCC GGTGCCCTGG CCGCGCCCAT CGACATCGTC GAGGAACGCA CCATCGGGCC GAGCCTGGGT GCCGAGAACG TCGAGCGGGG CTTCATGGCG GTGGTGATCG GATTCCTGCT GGTGATCGCC TTCATGGCGC TCTACTACCG CACCTTCGGT CTGGTGGCTA ACCTGGCGCT GCTCAGCAAT CTGGTGATCA TCGTCGCCGT GCTCTCCATG CTGCAGGCGA CCCTGACGCT GCCGGGCATC GCCGGGATCG TGCTGACCGT GGGGATGGCG GTGGACGCCA ACGTGCTCAT CTTCCAGCGC ATCCGCGAGG AGCTGAAGGC CGGTGCGCCG ATCCAGACCG CCATCGATGC CGGCTACGGC AAGGCGCTGT CGACCATCGC CGACGCCAAT GTCACCACGC TGATCGCCGC CCTGGTGCTG TTCCTCTTTG GCACCGGACC GGTCCAGGGC TTCGCCGTGA CGCTGGCCAT CGGTCTGGCC ACGTCGATGT TCACCGCCAT TGTCGGCACG CGGGCCGTGA TCAACCTGAT CTACGGCGGG CGCAAGGTCT CGGAGCTCAA GATCTAG
|
Protein sequence | MNRYPLWKYL LVVAVLVVGG LFALPNLFGE DPSVVITTGD DEVPSEEVQS DVLGFLEEEG YKPLSAEVLE GQWVLRYGST DEQMRASDLI SAKLDREYSV AMTLVPATPQ WLRAMGAEPM FLGLDLRGGV HFLLQVDIDA MVGETMEGHQ QDIRTLFREE RIRFSALEVT DEQQIRMAFA DTDLRARALE ALEEHIEGLN YSEEEDEDTY TLIASMDEEE LQEMKDLAVQ QNITTLRNRV DELGVAEPVI QRQGADRIVV QLPGIQDPGQ AKEILGATAT LEFRFVDHAN FPFTGDPDDP PEGSEVFPQR DGGYVALERQ RILSGDRIID ASSGFDQESG SPEVNIRLSG TGGRIMNRAT RDRVGDHMAV LFQERISETQ MVDGEPERVI RELEEVISVA RIREGLGSRF RITGLDSSQE ASNLALLLRA GALAAPIDIV EERTIGPSLG AENVERGFMA VVIGFLLVIA FMALYYRTFG LVANLALLSN LVIIVAVLSM LQATLTLPGI AGIVLTVGMA VDANVLIFQR IREELKAGAP IQTAIDAGYG KALSTIADAN VTTLIAALVL FLFGTGPVQG FAVTLAIGLA TSMFTAIVGT RAVINLIYGG RKVSELKI
|
| |