Gene Hhal_1643 details

Gene Information

• Locus tag: Hhal_1643
• ID: 4709923
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 1793861
• End bp: 1795762
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 639856108
• Product: PAS/PAC sensor hybrid histidine kinase
• Protein accession: YP_001003209
• Protein GI: 121998422
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.231435
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGACCG AACAACAGAC CCTGCTCGAG GTCGCCCGGG CCACCACCGC CATCGGCGGC 
TGGATGCTCG ACCGCTCCAC CCAGGCGGTA CACCTCTCCA CAGAGACCCG GCGGCTACTT 
GAACTACCCC CGGAGCACCG GATGGATCTG CGCACCGGAC TCGGCCTCTA CCCACCCGAG 
TATCGGCCGA TCGTCACCCG CGCTATCCAC ACCACCCTCC ACCACGCCCG CCCCTTCCAG 
CTCGACGTCG ACATCCACAC CGCCACCGGC AAACGGCTCC ACGTGCGCAA ACTCGGCAAG 
CCGCTGATGG ACGACTACGG CAATGTCCTG GGTCTGCGCG GCGCGCTGCA GGACCTGACC 
GAGATCAAGA CCGCCGAGCG CCAAGCCCGC CGCCTGTCCC AGCGCCTGGA GACCACCCTG 
GAGAGCATCA CCGACGCGTT CTTCTTGGTC GACCCGGCCT GGCGTTTCAC GTTCCTCAAT 
CGCGAGGCGG AGCGCCAGCT CAACTGTCAG CGCGAGGACG TGCTCGGCCG CGTGGCCTGG 
GAGGTCTTCC CGGAGGCGCT GGGGACCGCC TTCGAGGAGC ACTACCGATA TGCCTTGGCG 
CAGCAGGAGC CCGTGGTCTT CGAGGCGTAC TTCGCGCCCG TCGAGACCTG GTTCGAGGCC 
CGGGCCTACC CATCGGACGA GGGACTTGCG GTCTACTTCC GCGACATCAG CCAACGCAAA 
CAGGCGGAAG CGGAGATGGC CCAGCTGAAC GAAGAGCTAC ACCAGGCCCG GGAACGCGCC 
GAACAGGCCA GCCGAGCCAA GTCGGAATTC CTCGCCGCGA TGAGCCACGA GCTGCGCACT 
CCGCTGAACG CCATCACCGG CTTTGCGCAA CTGCTCCACC AAACCCCGCC CGACGAAACG 
CAAGACCGCG ATCAGCACCT TGAGCAGATC CTCTCGGCCG GCTGGCACCT GCGGGACCTG 
ATCGGCGACG TGATCGACTT CGCCCAGATC GAGACCGGTC AACTGGCGGT TCATGCGGAG 
CCCATGGCCA TCGACGCCCT CGCCCGCAAC AGCGTGGCGA TGATCACCGA GCAGGCGCGT 
CGGCGTGGTC TCACAGTGCA CTGCCAGAGC GACCCCATTG CGCCCCCTTG GGCCCGCGCC 
GACCCGGTTC GCAGCCGACA AGTGCTGCTT AACCTGCTCT CCAACGCCGT CAAGTACAAC 
AACCCGCACG GCACAATCAC CGTTACCTGG TCCACCGCCG GTGGCAGTGT TCAGGTAGAC 
GTCGCCGATA CGGGCAGCGG CATCCCGCAC GGTCGCCGCG ATCGTCTCTT CGAGCCCTTC 
GAGCGACTCG GTCGTGAAGC CGGCTCCATC GAGGGCAGCG GCATCGGTCT GTCATTGTCC 
CAACGACTCG CCCGGATGAT GAGCGGGGAT CTGCAGCTGC TTCACAGCAG CCCCGATCGC 
GGGACCACCA TGCGACTGAC CCTGCCTCGC TACAGCGATG ACCACTCAGC GACTAGCACG 
CCGCCCGTCA GCCTAAGCGA AGCCGCGCCC GCCGCGCCCA TGCGCATCTG CTACATCGAG 
GACAATGAGC TCAACATGAT GGTGGTGCGC GGTCTGATCC GCCGGAAAAC GACCGTCACC 
CTAGACGAAG CCTGGACCGG CGCCGAGGGG CTGGCGCGAA TCCGCCAGGG CCCACCCGAC 
CTGGTTCTGC TGGACATGCA CCTGCCCGAC ATGCACGGCC GGCAGGTGCT GCGCGAGATC 
CGCGCCGACC CGGTACTGAC TCACCTCCCG GTCGTGGCCC TGAGCGCGGA CGCCGCCAAC 
GAAACCCTGG AAACCGCCGA CGGCACCCTG GACGGCTACC TGCTCAAGCC GTTCCGGCTG 
GCCGATCTGG ACGCCCTGAT CGCCCGCTTC GCCCCGGCAT GA 

 

Protein sequence

MVTEQQTLLE VARATTAIGG WMLDRSTQAV HLSTETRRLL ELPPEHRMDL RTGLGLYPPE 
YRPIVTRAIH TTLHHARPFQ LDVDIHTATG KRLHVRKLGK PLMDDYGNVL GLRGALQDLT 
EIKTAERQAR RLSQRLETTL ESITDAFFLV DPAWRFTFLN REAERQLNCQ REDVLGRVAW 
EVFPEALGTA FEEHYRYALA QQEPVVFEAY FAPVETWFEA RAYPSDEGLA VYFRDISQRK 
QAEAEMAQLN EELHQARERA EQASRAKSEF LAAMSHELRT PLNAITGFAQ LLHQTPPDET 
QDRDQHLEQI LSAGWHLRDL IGDVIDFAQI ETGQLAVHAE PMAIDALARN SVAMITEQAR 
RRGLTVHCQS DPIAPPWARA DPVRSRQVLL NLLSNAVKYN NPHGTITVTW STAGGSVQVD 
VADTGSGIPH GRRDRLFEPF ERLGREAGSI EGSGIGLSLS QRLARMMSGD LQLLHSSPDR 
GTTMRLTLPR YSDDHSATST PPVSLSEAAP AAPMRICYIE DNELNMMVVR GLIRRKTTVT 
LDEAWTGAEG LARIRQGPPD LVLLDMHLPD MHGRQVLREI RADPVLTHLP VVALSADAAN 
ETLETADGTL DGYLLKPFRL ADLDALIARF APA