Gene Hhal_1642 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_1642 
Symbol 
ID4709914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp1792316 
End bp1793680 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content67% 
IMG OID639856107 
Producttryptophan synthase subunit beta 
Protein accessionYP_001003208 
Protein GI121998421 
COG category[R] General function prediction only 
COG ID[COG1350] Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) 
TIGRFAM ID[TIGR01415] pyridoxal-phosphate dependent TrpB-like enzyme 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.890772 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGAGA CCGTCAAGTA TGTCCTCGAT GAGGCGCGGA TCCCGCGCGC CTGGTACAAC 
ATCAGCGCCG ATCTGCCCGC CCCGCTGGCG CCGGTGCTCC ACCCGGCAAC CCGGGAGCCG
GTTTCGGCGG ACGACCTGGC GCCGCTCTTC CCGCGCGGAG TGATTGAGCA GGAGCTGACT
ACGGAGCGGG AGGTCGAGAT CCCGGAGCCG GTTCGCAACG CCTATCGGCA GTGGCGGCCG
GCGCCGCTTT ACCGGGCCCG GCGCCTGGAG AAGGCCCTCG ATACCCCGGC GCGCATCTAT
TACAAGTACG AGGGCGTCAG CCCGGCCGGG AGTCACAAGC CGAATACCGC GCTCCCGCAG
GCCTTCTACA ACCACGCCGA GGGGGTGCGC CGCATCACCA CCGAGACTGG GGCCGGTCAG
TGGGGGTCGT CCCTGGCGCT GGCCGGCGCC ATGTTCGATC TCGACATCGA GGTCTTCATG
GTGGGGGTCA GTTATAAGCA GAAACCCTAC CGGCGTGCGT TCATGGAGAG CTTCGGTGCG
CGGTGCATTG CCAGCCCGAG CCAAGAGACC GCCTTTGGCC GCTCGGTCTT GGCGGACAAC
CCGGCCAGCA CCGGGAGTCT GGGCATCGCC ATCGGCGAGG CGGTGGAGCT GGCCGCGCAG
CGCGACGACA CCAAGTACGC GCTGGGCAGC GTGCTCAACC ACGTCCTGCT ACATCAGACC
GTGACGGGTG TCGAGGCGAT GGAGCAGATG GCCATGGCCG ACGATTACCC CGACACGGTC
ATTGCCTGTA CCGGGGGTGG CAGCAACTTC GCGGGGATCG TTTTCCCGTT CCTCGGCGCC
GCCCTGCGCG GCGGCCCGAG CGTCGAGGCC ATCGCCGTGG AGCCGCTGGC CTGTCCGACC
CTAACCCGGG GGCAGTTTGC CTACGATTAC GGTGACTCGG CGCAGTTGAC GCCGCTGACC
AAGATGCACA CCCTTGGCTC CGGTTTCATG CCCCCGGGGT TTCACGCCGG GGGGCTGCGT
TACCACGGCA TGGCCCCCCA GATCAGCCAT TTGAAGGACC TCGGCTACCT CGACGCGCGG
GCCTACGATC AGCTCGACTG CTTTGCTGCC GGTCTGGAAT TTGCGCGGGC CGAGGGCATC
ATCCCCGCCC CCGAGGCCAA TCACGCGGTC AAGGCGGTGA TCGAGGAGGC CCAGGGGTGC
CGCGAACGTG GCGAGTCGAA GGCGATCCTG TTCAACCTTT GCGGCCACGG TAATTTTGAC
ATGCAGGCCT ATACGGATTA CCTGGCGGGC AACCTCAGCG ACCTCGGCGG CAGCCAGGTC
GAGGCGGCCA TGGCGCTGTC CGGACTGCCG TCGGTGGAGC GTTGA
 
Protein sequence
MSETVKYVLD EARIPRAWYN ISADLPAPLA PVLHPATREP VSADDLAPLF PRGVIEQELT 
TEREVEIPEP VRNAYRQWRP APLYRARRLE KALDTPARIY YKYEGVSPAG SHKPNTALPQ
AFYNHAEGVR RITTETGAGQ WGSSLALAGA MFDLDIEVFM VGVSYKQKPY RRAFMESFGA
RCIASPSQET AFGRSVLADN PASTGSLGIA IGEAVELAAQ RDDTKYALGS VLNHVLLHQT
VTGVEAMEQM AMADDYPDTV IACTGGGSNF AGIVFPFLGA ALRGGPSVEA IAVEPLACPT
LTRGQFAYDY GDSAQLTPLT KMHTLGSGFM PPGFHAGGLR YHGMAPQISH LKDLGYLDAR
AYDQLDCFAA GLEFARAEGI IPAPEANHAV KAVIEEAQGC RERGESKAIL FNLCGHGNFD
MQAYTDYLAG NLSDLGGSQV EAAMALSGLP SVER