| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1603 |
|---|
| Symbol | |
|---|
| ID | 4709313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 1744480 |
|---|
| End bp | 1745568 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639856068 |
|---|
| Product | photosynthetic reaction center subunit cytochrome c |
|---|
| Protein accession | YP_001003169 |
|---|
| Protein GI | 121998382 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.199827 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTA AAATGTATCT GAACCGATCC TTGGCAGTTG GTGCCCTGTC CGCCGGCCTC
GCGGTCGTCG TGGGGTGCGA GCGCCCCCCG GTGGACTCCG AGCAGAAGGG GTACCGTGGC
ACCGGCATGG AAGAGGTCAC CAACCCGCGG CTGCGGGACG ATGACCTCCA CCTGGCGCCG
GAGGCGGCGG ACCCGGTCTC GGCCGAGGGC CCCAAGGCTG GCGAGATCTA CCAGAACGTC
GAGGTGCTCA CCGACCTGAG CGTCGCCGAG TTTACCCGGC TCATGCAGAG CATGACCGAC
TGGGTGGCGC CGGATGAGGG ATGCACTTAT TGCCACGACG GCAACGACTT CGCCAGCGAG
GAGCTGTACA CGTACCAAGT CTCTCGGCAG ATGATCGAGA TGAATCGGTA CGTGAACGCC
AACTGGGAAA GCCACATGGA TGACACGGGC GTGACCTGCT ACACGTGTCA CCGTGGCGAG
AATCTGCCGG AGGAGAGCTG GTTCGCCGAG CCTGAGCTGG ATTTCAACGT CCATGGGCTT
GGCAACGACC AGATGCAGAA CCTGGCCAGC GAGAAGGTGG GGTTCACCTC GCTGCCGCGG
AACGTGTTCG AGCGCTATCT GCTTGGCCAC GACGATCTGC GGGTCGAGGG TGACACGATT
CTCCCCAACC TGGACGAGTG GGACGTCTCG CTGCAGGACA CCGAGGCCTC CTACGGCCTG
ATGATGCATA TGTCCGACGC GACCGGCTCC AACTGCACCA CGTGCCACAA TACCGGCCGT
CTGGGGCAGT GGGACGAGAG CCCGGTGGAG CGGGAGATCT CCTGGCACGG CATCCGGATG
ACGCGTGACA TCAACGCCAA CTGGATGGAG CCGCTGGAGG CTGGTCAGCC CGACGTCCGC
CTGGGGCCGA CTGGTGACAT CGCCAAGGTC CAGTGCGCCA CCTGCCACTA CGGTGAGCAG
CTGCCGCTGG ACGGGGCCAA GATGGTCGAT GACTATCCGG GCCTGATGGG CGAGGAGGAC
GAGGACTTCG ACTTCCTGCA GTTCGGTGAT CTCGGCACGG AGGGTCTCCG CGACCGCGAC
GCCGAGTAA
|
|---|
| Protein sequence | MSSKMYLNRS LAVGALSAGL AVVVGCERPP VDSEQKGYRG TGMEEVTNPR LRDDDLHLAP
EAADPVSAEG PKAGEIYQNV EVLTDLSVAE FTRLMQSMTD WVAPDEGCTY CHDGNDFASE
ELYTYQVSRQ MIEMNRYVNA NWESHMDDTG VTCYTCHRGE NLPEESWFAE PELDFNVHGL
GNDQMQNLAS EKVGFTSLPR NVFERYLLGH DDLRVEGDTI LPNLDEWDVS LQDTEASYGL
MMHMSDATGS NCTTCHNTGR LGQWDESPVE REISWHGIRM TRDINANWME PLEAGQPDVR
LGPTGDIAKV QCATCHYGEQ LPLDGAKMVD DYPGLMGEED EDFDFLQFGD LGTEGLRDRD
AE
|
|---|
| |