| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1588 |
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| Symbol | |
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| ID | 4709240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 1726552 |
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| End bp | 1728204 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639856053 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001003154 |
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| Protein GI | 121998367 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1388] FOG: LysM repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.128959 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGACGTGA AACGGACAGC TGCCGGAGCG TTGACCGCTC TTTCTGTCAC CGCCTGCACA
AGCTTTGATT CACGCACCTT TGTCCACGAT CTACACGGCC CGGAGCGGAA CGGGCGCGAC
GTACCGGTGT GGGTCCAGGA TCTCGATACC GAGACCCTGG AAACCGGGCT GGGGCGGCCG
TTCGATCTGG CACCGGATTA CGAGTATCAG CCCGGACACT ACACACAGAC CGTGCCCGAC
TACCCCCTCG AAGTATGGGA CCGGATGCGG CAATCCTTCC AGCTGGGTAC CTACGAGAAC
GACCGGGTCG AACGGGAGCT CGAACTCTTC TCCGGGCGGG ACGCCTATTT CGACGCCGTT
GGCCGTCGTG CCGAGCCGTA TCTCTACTAC ATCCTGGACG AACTGGAAGA GCGCGATCTG
CCTGCCGAGC TGATCGCTCT AGCCATCGTC GAAAGCGGAT TCCGCCCCTT CGCGTACTCC
CACGGCCGCG CGGCCGGTAT CTGGCAGTTC ATCCCGAGCA CGGGCCGTTT CTTCGGCCTG
GACATGAACT ACTGGTACGA CGGACGGCGG GATCTGATCG CCTCCACCGA CGCCGCCCTG
GACTACCTGG AGCGGCTCAA CGAAGCGTTC GACGGTGACT GGCTGCTCGC CATGGCCGCC
TACAACGCTG GCCAGGGCAA TGTGCGCGCT GCCATACAAC GGGCCCGAGC CGAGGGGAAG
GATCCCAACT ACTGGAACCT GCAACTCCCC GCCGAGACCA TGCGCTATGT TCCGCGCATC
CTGGCGATCC GGGACATCCT CCAGGACCCC GAGGCCCATC AGGTCGCCCT GCCCAACATC
CCGAATCAAC CACGTATCCG CGTGGTCGAG GCCGACCGCC AGATCGACCT CGCCCTGGCC
GCAGAACTCG CTGATCTGTC CATCGACCGG CTCTACATCC TCAACCCCGG GCTCAACCGC
TGGGCGACCG CGCCCGAGGG GCCGCACCGG CTCGTGCTGC CCAAGGAGAA CGCCGACCGG
TTCCAACAGG AGCTCGCCTC CATGGATCCG GAGGACTTTG TGGAGTGGCG GCGCCACGAG
GTCAACTCTG GCGAGACCCT GACCCACGTC GCCAACCAGC ACAACGTCAC GGTGGATCTA
CTGCGGGATA TCAACGGGCT TCGCGATGAC ACGGTTCGCG CCGGCGACCA CCTCTACGTC
CCGGTCTCGA GCCGCCCACC CAGCGAATAC TCACTGAGCG CGGCCAACCG CCTGCAGGCC
CTGCAAAACC GCGAGCGCCA GGGTGAGCGG CGTGAGCACA CCGTTCAGGC CGGCGAGACC
CTGTGGGACA TCGCCCGCAC CTACAGCGTC GGCGTCAAGG AGCTGGCACG CTGGAACGGC
ATGGCACCCG GCGATACCCT GCGCCGCAGC CAGGAGCTCG TGGTCTGGGT GGAAGGAGAC
GCCATGCAGG CCTCCGGCGG CCCTAGCGAC CGCACCCAGT CGGTCACCTA CACCGTCCGC
CAGGGCGACT CCCTAGCCCG CATCGCCCAA CGCTTCAATG TCGATGTGCG GGATATCAAG
CACTGGAACG GGATTTCGGA AGGCTCTTAT CTACATCCCG GGGACCAGCT GAGGCTGGAA
GTCGACGTCA CGCAGCAAAG CAGCAGCCTG TAG
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| Protein sequence | MDVKRTAAGA LTALSVTACT SFDSRTFVHD LHGPERNGRD VPVWVQDLDT ETLETGLGRP
FDLAPDYEYQ PGHYTQTVPD YPLEVWDRMR QSFQLGTYEN DRVERELELF SGRDAYFDAV
GRRAEPYLYY ILDELEERDL PAELIALAIV ESGFRPFAYS HGRAAGIWQF IPSTGRFFGL
DMNYWYDGRR DLIASTDAAL DYLERLNEAF DGDWLLAMAA YNAGQGNVRA AIQRARAEGK
DPNYWNLQLP AETMRYVPRI LAIRDILQDP EAHQVALPNI PNQPRIRVVE ADRQIDLALA
AELADLSIDR LYILNPGLNR WATAPEGPHR LVLPKENADR FQQELASMDP EDFVEWRRHE
VNSGETLTHV ANQHNVTVDL LRDINGLRDD TVRAGDHLYV PVSSRPPSEY SLSAANRLQA
LQNRERQGER REHTVQAGET LWDIARTYSV GVKELARWNG MAPGDTLRRS QELVVWVEGD
AMQASGGPSD RTQSVTYTVR QGDSLARIAQ RFNVDVRDIK HWNGISEGSY LHPGDQLRLE
VDVTQQSSSL
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