| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1533 |
|---|
| Symbol | |
|---|
| ID | 4709182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 1665630 |
|---|
| End bp | 1666979 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639856000 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_001003102 |
|---|
| Protein GI | 121998315 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR02915] putative PEP-CTERM system response regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.104993 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGGGCACG CGAACCACCT GCTGATCGTC GAGGATGACA AGGGGCTCCA GGAACAGCTG
CGCTGGTGTT TCGACGGCTA TGAGATCGTT CCGGCCTTCG ACCGCGCGGA GGCTGTTGCT
TTGGCGCGGC GTTACGAGCC CGAGCTCGTC CTGCTTGATC TCGGGCTCCC CCCGGATCCG
GCCAATGCCA GCGAGGGGCT GGCGGCCCTG CAAGAGGTGC TCGCCGAGGC GCCCGAGAGC
AAGGTGATCG TGGTCACCGG TAACGATGAC CGGGAGAATG CGCTCAAGGC CGTCGCGCTC
GGCGCCTACG ACTTCTACGG GAAACCGGTG GATCCGGATA CCCTGCGACT GCTAGTGGAT
CGAGCCGCAC AGCTTTATAG CCTCGAGGCG GAGAACCGTC GTCTGGCACA ACAATCGGCA
TCGCCGCTGG AGGGGTTCCT TAGCTCGGAC CCGGGGGCGC TGCAGGTCTG CCGGATGGTC
GAGCGCGTCG CCCCGGCGGA TGCTACGGTC CTGCTGCGCG GGGAGAGCGG TACCGGCAAG
GAGATCCTCG CCCGTGCGGT TCATCGGCTC AGTGGCCGCC GTGAGCAGCG TTTCGTTGCC
ATCAACTGCG CCGCGATCCC GGAGAATCTC CTCGAGAGTG AGCTCTTCGG GTATGAGAAG
GGTGCTTTTA CCGGGGCCAA CCGCCAGACC ATTGGCAAGA TCGAATACGC CAGTGGCGGG
ACGCTGTTCC TCGACGAGAT CGGCGACTTG CCCTTGAGTC TTCAGGCCAA GCTGCTTCGC
TTTCTGCAAG AGCGGACCAT CGAGCGCCTC GGGGGCCGGC AATCGATCGA GGTGGACGTG
CGGGTGGTTT GTGCCACCCA TCGCGATCTG GCGGAGATGA TTCGCGACGG CGGCTTCCGC
GAGGATCTTT TCTACCGCGT TGCCGAGATC GAGCTGACCA TACCGCCGCT GCGCGAGCGT
CCTGGTGACG CCGTTCTCGT GGCCCACGCC CTGCTCGATC GCTTCGCCCG CGAGCAGCGC
CAGCCGCGTC GCCTGTTGAC CCCGGAGGCT ATCGACGCCA TCGAGGCCTA CCCGTGGCCC
GGCAACGTGC GGGAGATGGA GAACGTCATC CGCCGGGCGG TGATTATGGC CGATGGCAAA
AAGATTGCTG CGGAGGATCT CGCGCTGGAA GTACCGGAGG GTGGTGGCGA GGACCGGCTG
CGCCTCAAGG ATGCCCGGGA GCAGGCCGAG TACCAGGCGG TCGTCCGTGC GCTAAGCCGC
TCGAATGGGA ATATCGCGCA GGCCGCCGGT CTGCTGGGGA TTACTCGGCC GACCTTGTAC
ACCCTCATGG ATAAATTCGC CCTGCGCTGA
|
|---|
| Protein sequence | MGHANHLLIV EDDKGLQEQL RWCFDGYEIV PAFDRAEAVA LARRYEPELV LLDLGLPPDP
ANASEGLAAL QEVLAEAPES KVIVVTGNDD RENALKAVAL GAYDFYGKPV DPDTLRLLVD
RAAQLYSLEA ENRRLAQQSA SPLEGFLSSD PGALQVCRMV ERVAPADATV LLRGESGTGK
EILARAVHRL SGRREQRFVA INCAAIPENL LESELFGYEK GAFTGANRQT IGKIEYASGG
TLFLDEIGDL PLSLQAKLLR FLQERTIERL GGRQSIEVDV RVVCATHRDL AEMIRDGGFR
EDLFYRVAEI ELTIPPLRER PGDAVLVAHA LLDRFAREQR QPRRLLTPEA IDAIEAYPWP
GNVREMENVI RRAVIMADGK KIAAEDLALE VPEGGGEDRL RLKDAREQAE YQAVVRALSR
SNGNIAQAAG LLGITRPTLY TLMDKFALR
|
|---|
| |