| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1521 |
|---|
| Symbol | |
|---|
| ID | 4709509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 1648674 |
|---|
| End bp | 1650218 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639855988 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_001003090 |
|---|
| Protein GI | 121998303 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR03007] polysaccharide chain length determinant protein, PEP-CTERM locus subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0377577 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCAGA TGGAGCAGGT CGTCCAGGAA GTGCTGCACC AACTGCGAGC GACCTGGCGT
CGACGGTGGT GGATCCTTCC CATCGCTTGG CTGGTCTGTA TACCCGGGTG GGCGTACATC
CACGCCCTCC CCGACACCTA CGAGGCGTCG AGCGAGGTCT ACGTCGATAC GGATTCGGTG
CTCGGTCCAC TGCTCGGCGG CATGACGGTG CGACCGGACG CTGAGCAGCG GATGAACATG
ATTACCAGCA CGCTGCTGAG CCGGGATAAC CTGCGTGAGA TCGCGCGGCA GGCGGACCTC
GACATTCTCC TCGGCTACGA CGACATCGAC CGCGCCGTCG ATAGCCTGCA GGACATCGAT
CTGCGCGGGG GTGACGAAAG TGGGGCTGGG GACAATATCT ATACGATCAG TTTTTCCGAT
GAGGACCCGG AGGTGGCCTA TCGCGTGGTG CGTCAGACCG GTGACCTCTT CATGGAGCGG
GGCCTCGGTG ACCCGCGGAC GGATCTGACG GCCTCGCGCG ATTTTATCGA GAATCAGCTC
GACCGTTACG GCACTCGGCT GCGGGCGAAG GAAGAGCAGC TTGAGGATTT TCGCCGTGAG
CACTCGGAGG TTCTGTTGGC CGGCGGCGAT TTTTATAGCC GCTTGCGGGC CGAGCGTGAG
CGGTTAGCTG AGGCGGAGTT GGAGTTTGAG CAGGCTCAAA GCCATTATGA GAGCCTCATC
GCACAGCTTG AGGGCGATGG CGATCACCCC GGATTAGTGC AGCCTCCGGA GTTCGAGAAT
CCGGAGCTAG ACGCTCGCAT CAGTAACCTG GAATCCGAGC TTGATGAGCT GCGCCGCCAG
TATACCGATC AGCATCCGGA CGTGGCGCAT ACGCAGCGCG TCCTTGAGGA TCTGCGCGAG
GAGCGGGAGG AGCAGGCGGT GGAGTTCAGC GAGAGCCTGA TGGCCTCCCC GGTAGATCGC
GTTGGTCTAG GTCAGCCCGA TCATCCGCTG CAGCTGGAGT TGGCCGAATC GGAAAGCCGT
GTGGCCTCGC TGGAGACTCG GGTTGAGGAG CAGCGCCTGC GGGTCCAGGA ACTTGAGGCG
GTCTCCGACG ACGTGCCGGA GATCGAGTCG GAATACAGTC GGCTCACACG GGACTACGAA
GTCCTGCAGA ACAGCTACTC TGAGTTACGG GATCGGCTTG AGCAGGCTGT GCTGACCGGC
GAAGTGGAGT CAGGCGCGGA CTCGGTGGAC TTTCGCGTCC TGCAGCCACC GGAGCAGCCA
AGTGAGGCGG CAGCGCCGAA CCGCCCCCTG CTGGGCAGCG CGGTTCTGGT CCTGGGGCTG
GGGGCCGGCA CGGGATTCGC CTTCCTGCTG GCCCAGATTC GCGGCACGGT GGCCGCGCCC
GGCCAGCTCG GCGAGCTCAC CGGGCGGCCC GTCATGGGGC AGATCTCGCG GGTGCGAACG
CCGGCCCACC GGCGCCGCAG GCGCATGGAG ATGCTCGTCT TCTTCAGCGC AACCGGAGCC
TTGTTGGTTG CCTATGGGGT GGTGGTTGGG GTCTTTTTTG CCTAG
|
|---|
| Protein sequence | MGQMEQVVQE VLHQLRATWR RRWWILPIAW LVCIPGWAYI HALPDTYEAS SEVYVDTDSV
LGPLLGGMTV RPDAEQRMNM ITSTLLSRDN LREIARQADL DILLGYDDID RAVDSLQDID
LRGGDESGAG DNIYTISFSD EDPEVAYRVV RQTGDLFMER GLGDPRTDLT ASRDFIENQL
DRYGTRLRAK EEQLEDFRRE HSEVLLAGGD FYSRLRAERE RLAEAELEFE QAQSHYESLI
AQLEGDGDHP GLVQPPEFEN PELDARISNL ESELDELRRQ YTDQHPDVAH TQRVLEDLRE
EREEQAVEFS ESLMASPVDR VGLGQPDHPL QLELAESESR VASLETRVEE QRLRVQELEA
VSDDVPEIES EYSRLTRDYE VLQNSYSELR DRLEQAVLTG EVESGADSVD FRVLQPPEQP
SEAAAPNRPL LGSAVLVLGL GAGTGFAFLL AQIRGTVAAP GQLGELTGRP VMGQISRVRT
PAHRRRRRME MLVFFSATGA LLVAYGVVVG VFFA
|
|---|
| |