Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1517 |
Symbol | |
ID | 4710664 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | - |
Start bp | 1644116 |
End bp | 1645021 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639855984 |
Product | polysaccharide deacetylase |
Protein accession | YP_001003086 |
Protein GI | 121998299 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | [TIGR03006] polysaccharide deactylase family protein, PEP-CTERM locus subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0751328 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGGAGC GCAGCTGGGC GCGGTGCAAT GCGCTGACAG TGGATGTCGA GGATTACTTT CAAGTCCTGG CCATGGCGCC GTATGTGGGG CGGGACGCAT GGGAGCGCTG GCCTTGTCGC ATCGAGGCAA GCATGGATCG GCTTCTGCAG ATCTGTGCCG ACCGCTGTGT TTGCGGCACG TTCTTTACCC TCGGCTGGGT GGCGAAGCGC TATCCGCAGG TTGTCCGCCG CATCGTGGCT GCCGGTCACG AGTTGGCGAG CCACGGATAC GGGCATGAGC GCGTCTGGGA GATCGGGCCG CGCGCATTCC GCGAGGATTT GATCCGGGCT AAGGGGCTGT TGGAAGACAC CGGCGGGGTG CCGGTGGTCG GTTATCGGGC GCCGGCCTTT TCCATCGGGC CGCGAACGCC CTGGGCGCGA GAGATCCTGC AGGAGACCGG TCACCGCTAC AGCTCAAGCG TCTACCCGGT CCGGCATGAC CACTACGGCA CCCCTGAGGC ACCACGACAC GCCCATCGTC CGGATGGGCA AGGCGGCCTC CTAGAGTTGC CCCCGGCGAC GCTTCGGCTC CTTGGTCGGA ATCTTCCGGC GGGTGGCGGC GGCTATTTTC GACTTCTGCC CTACCGGGTC TCGTGGGCAG CTCTGCGCTG GATCGCCCAA GCGGAGGGGC AGCCGGCGGT GTTCTATATT CACCCCTGGG AGCTCGATCC CGAGCAGCCG CGGGTCCCGG GCATCGATCT CCGCACCCGC GTTCGTCACT ACGTGAACCT GCATCGCACG GAGCAGCGGC TCAGTCGGTT GCTCCAGGAT CTGGACTGGG ATCGGATCGA TCGCGTCTTT GCGCCGGAGT TGGCCGGTGT CAGCGACTGG CAGGCCGGGC AGGCGGTTTC AGCCCAGGCA TTCTGA
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Protein sequence | MEERSWARCN ALTVDVEDYF QVLAMAPYVG RDAWERWPCR IEASMDRLLQ ICADRCVCGT FFTLGWVAKR YPQVVRRIVA AGHELASHGY GHERVWEIGP RAFREDLIRA KGLLEDTGGV PVVGYRAPAF SIGPRTPWAR EILQETGHRY SSSVYPVRHD HYGTPEAPRH AHRPDGQGGL LELPPATLRL LGRNLPAGGG GYFRLLPYRV SWAALRWIAQ AEGQPAVFYI HPWELDPEQP RVPGIDLRTR VRHYVNLHRT EQRLSRLLQD LDWDRIDRVF APELAGVSDW QAGQAVSAQA F
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