Gene Hhal_1517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_1517 
Symbol 
ID4710664 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp1644116 
End bp1645021 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content66% 
IMG OID639855984 
Productpolysaccharide deacetylase 
Protein accessionYP_001003086 
Protein GI121998299 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID[TIGR03006] polysaccharide deactylase family protein, PEP-CTERM locus subfamily 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0751328 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGGAGC GCAGCTGGGC GCGGTGCAAT GCGCTGACAG TGGATGTCGA GGATTACTTT 
CAAGTCCTGG CCATGGCGCC GTATGTGGGG CGGGACGCAT GGGAGCGCTG GCCTTGTCGC
ATCGAGGCAA GCATGGATCG GCTTCTGCAG ATCTGTGCCG ACCGCTGTGT TTGCGGCACG
TTCTTTACCC TCGGCTGGGT GGCGAAGCGC TATCCGCAGG TTGTCCGCCG CATCGTGGCT
GCCGGTCACG AGTTGGCGAG CCACGGATAC GGGCATGAGC GCGTCTGGGA GATCGGGCCG
CGCGCATTCC GCGAGGATTT GATCCGGGCT AAGGGGCTGT TGGAAGACAC CGGCGGGGTG
CCGGTGGTCG GTTATCGGGC GCCGGCCTTT TCCATCGGGC CGCGAACGCC CTGGGCGCGA
GAGATCCTGC AGGAGACCGG TCACCGCTAC AGCTCAAGCG TCTACCCGGT CCGGCATGAC
CACTACGGCA CCCCTGAGGC ACCACGACAC GCCCATCGTC CGGATGGGCA AGGCGGCCTC
CTAGAGTTGC CCCCGGCGAC GCTTCGGCTC CTTGGTCGGA ATCTTCCGGC GGGTGGCGGC
GGCTATTTTC GACTTCTGCC CTACCGGGTC TCGTGGGCAG CTCTGCGCTG GATCGCCCAA
GCGGAGGGGC AGCCGGCGGT GTTCTATATT CACCCCTGGG AGCTCGATCC CGAGCAGCCG
CGGGTCCCGG GCATCGATCT CCGCACCCGC GTTCGTCACT ACGTGAACCT GCATCGCACG
GAGCAGCGGC TCAGTCGGTT GCTCCAGGAT CTGGACTGGG ATCGGATCGA TCGCGTCTTT
GCGCCGGAGT TGGCCGGTGT CAGCGACTGG CAGGCCGGGC AGGCGGTTTC AGCCCAGGCA
TTCTGA
 
Protein sequence
MEERSWARCN ALTVDVEDYF QVLAMAPYVG RDAWERWPCR IEASMDRLLQ ICADRCVCGT 
FFTLGWVAKR YPQVVRRIVA AGHELASHGY GHERVWEIGP RAFREDLIRA KGLLEDTGGV
PVVGYRAPAF SIGPRTPWAR EILQETGHRY SSSVYPVRHD HYGTPEAPRH AHRPDGQGGL
LELPPATLRL LGRNLPAGGG GYFRLLPYRV SWAALRWIAQ AEGQPAVFYI HPWELDPEQP
RVPGIDLRTR VRHYVNLHRT EQRLSRLLQD LDWDRIDRVF APELAGVSDW QAGQAVSAQA
F