Gene Hhal_1485 details

Gene Information

• Locus tag: Hhal_1485
• Symbol: smpB
• ID: 4709158
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 1604866
• End bp: 1605363
• Gene Length: 498 bp
• Protein Length: 165 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 639855952
• Product: SsrA-binding protein
• Protein accession: YP_001003054
• Protein GI: 121998267
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.352503
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCCCCG TGAGCAAGAA AGCCGGAAAA AGCAAAAAGA CCGAAGGCAA CGTCATCGCC 
CTCAATCGCA AGGCGGGCTT CGACTTTTTC GTCGAAGAGC GCCTGGAGGC CGGGCTGGCG 
CTGGAGGGGT GGGAAGTCAA GGCGCTGCGG GCCAAGCGGG TGAACCTGAC CGAGAGCCAT 
GTCCTCGTTC GACGCGGCGA GGCCTGGCTG ATCGGGTGCA ACATCACCCC GCTGAGTACT 
GCCTCGACCC ACATCCACCC GGACCCCACC CGAACGCGCA AGCTGCTGCT TCACCGCCGC 
GAGATCAATC GCCTGATCGG CGCCGTCGAT CGCGATGGTT ACACCGTGGT CCCGCTCAAG 
CTCTACTGGA AACGCGGCCG CGCCAAGATC GAGATCGGCG TCGCCAAGGG CAAGAAGAAG 
CAGGACAAGC GGGCGGATAA GAAGGAGCAG GACTGGCAGC GTCAACGCGA ACGCCTGCTC 
AAGCACAAGG TCAGCTGA 

 

Protein sequence

MRPVSKKAGK SKKTEGNVIA LNRKAGFDFF VEERLEAGLA LEGWEVKALR AKRVNLTESH 
VLVRRGEAWL IGCNITPLST ASTHIHPDPT RTRKLLLHRR EINRLIGAVD RDGYTVVPLK 
LYWKRGRAKI EIGVAKGKKK QDKRADKKEQ DWQRQRERLL KHKVS