Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1446 |
Symbol | |
ID | 4709177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | + |
Start bp | 1558196 |
End bp | 1560292 |
Gene Length | 2097 bp |
Protein Length | 698 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639855913 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001003015 |
Protein GI | 121998228 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAGACG ACTTGGCCTC CCCCACCACC TCCACCCGGG CACTGTCGAG CAGTCTGACG CAGACCCTCT TCCTACAGAG CGAAGACGGT ATGCTGGTGC TGCGCGATGG CCATTTCGTC GCCTGCAACC CGGCAGCCGC CCGCATGCTC GGCTGGGACG ATCCGCAGCA GTTGATCGGG CTGCGCCCGG AGGCTATCTC CCCCCAAATA CAGCCGGACG GCGCGTCGGC AGCGGATCGG GTCCAAAGCC TGCTTCGTGC CGCAGTGAGC GAGGGCGCAC AACGCTTCGA GTGGATCCAC ACCTCCCCGG AGGGCGGGCG ACTGTGGTTC GAAATCGTGC TCACTCCCCT GCACCTGGAC GACGAGACCC TGTGCTGCGC GACACTGCGT GACATCTCCC GGCGCAAGGA GATGGAGCGG CGGCTGCAGC TCTCTGCCAA GGTCTTCACC GCTACGCGCG ACGGGATCCT GATCACCGAC GCCGACAGCC GCATCCTCCA GGTTAACGAC GCCTTCACGC GGATCACCGG CTACGCCGAG GAAGAACTGC TCGGACGGAC GCCCCGGGTG TTGCAGTCGG GCCACCACGA CGCAGACTTC TACCGGGTCA TGTGGGAGTC CATCCACCAG CAAGGCAGCT GGTCCGGGGA GCTGTGGGAC CGCACCAAGT ACGGGACGCT GCAGCCGAAA TGGGTCACCA TCAGCAAGGT CACCGGCGCC TACGGCGAGG TCATCAACTT CATCGCGGTC TTCAGCGACC TGACCGAGCT CAAGCGCTCC CAGGAGCGGT TGCAGTTCCA GGCCTACCAC GACGCGCTCA CCGGACTGGC CAACCGGCTC CTGTTCAAGG ACCGCATGGC ACGCGCCCTG GAACGTTCCC GCCAGTCCGA AGAGCAGCTG GCCGTGCTGT TCATCGATCT GGATCACTTC AAGGACGTCA ACGACAGCCT GGGCCATACC GCCGGCGATC GCATCCTCCG TCAGGTCGCC CACCGACTCC AGGCACGCCT GGGTGCCGAC GACACCCTAG CCCGTCTCGG TGGCGACGAG TTCAGCATCT GCCTGGCCGA GATCCGCGAC CACCGTGATG CCCTGGCCTG CGCTGAAACG GTCCACCAGG AGCTGGAGCG GCCCTTCCAG TACAGCCAAC GCTGGTTCCA ATGCCGATGC AGCATCGGAA TCAGCATGTA TCCCGACAAC GGCGAAACCG TGGAAGAGCT GATCCGCAAC GCCGACTCGG CGCTGCACAA CGCGAAGGCG GAGGGCCGCA ATACCACGTG CTTTTATGCC GAGGAGCTGA CCGAGCGGGC CCAGCGCCGG CTGGACCTTG CCCAGGAGAT GCGCCAGGGG CTCCAGCGGG GCGAGCTGAT CCCCTATTTC CAGCATCAGG TCGACCTGAC CACCGGCCGC GTCGTCGGCA TCGAGGCCTT GGTGCGCTGG CACCACCCCG AACGGGGGCT GCTGACCCCC GGCGCCTTTA TCCCCGTGGC CGAGGAGGTC GGAACCATGG CCGCCCTCGG CGAGGACATC CTGCTGCAGG CGTGTCAGCA AGGCCGCACC TGGCTGGACC AGCGGCGCGA ATTCGGCCGG GTGGCTGTCA ACCTGTCCGC CGCCCAGTTC CACAACGGCG ACATCGAGAA GACCGTCCGG CGCACCCTGG AGCAGACAGG CCTGCCGGCC CAGTGCCTGG AACTGGAGAT CACCGAATCG ACCATCATGG ACCTCAGCCC CCGCACCCTG GAGCGACTGG CCGCTCTGCG CCGGGCGGGG GTATCGTTGA GCATCGATGA CTTCGGGACC GGCTACTCGT CCCTGCTCTA TCTCAAGCGC CTACCGATCA ACCGGGTCAA GATCGACCGC GGCTTCATCT GGGACATGGG GACGACGCCG GAATCCCGCT CCATCGTCGA TACCATCCTG CAGCTGGCCC ACGTGCTCGG CCTGGAGGTC GTGGCCGAAG GGGTGGAGAC CATCCAGCAA CGCGATCAGC TGATCGACGC CGGGTGCCGG GTCGCCCAGG GTTTCCTGTG GGCGCGCCCG GAGCCCCATC CCCACCTGCG CTGCTGCAGC GCGCAAGCGT CCAATGATCC GCCGTAG
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Protein sequence | MKDDLASPTT STRALSSSLT QTLFLQSEDG MLVLRDGHFV ACNPAAARML GWDDPQQLIG LRPEAISPQI QPDGASAADR VQSLLRAAVS EGAQRFEWIH TSPEGGRLWF EIVLTPLHLD DETLCCATLR DISRRKEMER RLQLSAKVFT ATRDGILITD ADSRILQVND AFTRITGYAE EELLGRTPRV LQSGHHDADF YRVMWESIHQ QGSWSGELWD RTKYGTLQPK WVTISKVTGA YGEVINFIAV FSDLTELKRS QERLQFQAYH DALTGLANRL LFKDRMARAL ERSRQSEEQL AVLFIDLDHF KDVNDSLGHT AGDRILRQVA HRLQARLGAD DTLARLGGDE FSICLAEIRD HRDALACAET VHQELERPFQ YSQRWFQCRC SIGISMYPDN GETVEELIRN ADSALHNAKA EGRNTTCFYA EELTERAQRR LDLAQEMRQG LQRGELIPYF QHQVDLTTGR VVGIEALVRW HHPERGLLTP GAFIPVAEEV GTMAALGEDI LLQACQQGRT WLDQRREFGR VAVNLSAAQF HNGDIEKTVR RTLEQTGLPA QCLELEITES TIMDLSPRTL ERLAALRRAG VSLSIDDFGT GYSSLLYLKR LPINRVKIDR GFIWDMGTTP ESRSIVDTIL QLAHVLGLEV VAEGVETIQQ RDQLIDAGCR VAQGFLWARP EPHPHLRCCS AQASNDPP
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