| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1388 |
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| Symbol | |
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| ID | 4711224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1496903 |
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| End bp | 1500841 |
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| Gene Length | 3939 bp |
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| Protein Length | 1312 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639855855 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001002957 |
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| Protein GI | 121998170 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGTGGCG TACCGCGCCA GCTTCGTGAG CTGCGCCAAC GTATCGAGGG CGCCTTCGGC
CCGCAGCGAC CGCCGCTGCG TCGGCGTCTG GCCGGGCTGG AGCGCTGTGC CCGGCAGGGT
CGCCCCTTCG ACCGGGGAGT GGCCCGCCTG GAGCAGGATC TGGCCGACTC CGAGGCCGAG
GTTACCCGGC GCCGGAGTGA GGCGATCGCC CTCGAGTACG ACCCTGATCT GCCGGTGGTT
CAGCGCCGCG AGGAGCTGCT CGAAGCGCTG CGTGAGCACC AGGTGGTGGT GGTCTGCGGG
GCCACCGGCT CCGGGAAGTC GACCCAGCTC CCCAAGATGT GCATGGAACT CGGTCTCGGC
ACCCGGGGGC TGATCGGCCA CACGCAGCCC CGGCGCATCG CCGCCCGGGC GCTCGCCGAG
CGGCTGGCCG AGGAGACCGG AACCCGGGTC GGCGAGACGG TAGGCTACAA GGTCCGCTTT
ACCGACCAAG TCGGTGAGCA GAGTCGGGTC AAGCTGCTCA CCGACGGCAT GCTGCTGGCC
GAGATCCAGT CCGATCGACA CCTGGACGCC TACGACACCC TGATCATCGA TGAGGCCCAC
GAACGCAGCC TCAACATCGA CTTCATCCTC GGCTACCTGA AACGCCTCCT GCCGCGTCGT
CCGGATCTGA AGGTCATCGT CACCTCGGCG ACCATCGACC CGGAGCGTTT CGCCGAGCAC
TTCGACGGAG CGCCGGTGCG GGAGGTCTCC GGGCGGACCT ACCCGGTGGA GATCCGCTAT
CGCCCTTATG AGGAGCGCGA AGGCGTCGAG CAGCCCCAGG CGGTGACCGA GGCGGTCCAC
GAGCTCGCCC GGGAAGGCCG TGGCGACGTG CTCGTCTTCC TCTCCGGGGA GCGGGAGATC
CGCGAGTGCG CCGAGGCGCT GCGCAAGAAC CCGCCCCGGG GTACCGAGAT CCTGCCGCTC
TACGCCCGAC TCTCCAGCGC CGAGCAGCAG CGGGTCTTCC ACCCCGGCTC CGGGGGGCGG
CGGGTGGTGC TCGCCACCAA CGTGGCGGAG ACGTCCCTGA CCGTCCCCGG GATCCGCTAC
GTGGTGGATA CCGGGCGGGC CCGGATCAGC CGCTACAGCC ACCGGACGAA AGTCTCCCGT
CTGCCGGTGG AACCGATTGC TCAGGCCTCC GCGGATCAGC GCGCCGGCCG GTGTGGCCGC
GAGGCCCCGG GTATCTGCAT CCGCCTCTAC AGTGAGGAGG ATTACGAGAG CCGGCCCCGT
TACACCGATC CGGAGATCCT GCGGACCAAC CTCGCCGGCG TCATCCTGCA GATGAAGGCC
ATGGGTCTGG GCGACATCGA GCGCTTCCCC TTCGTCGAGC CCCCCGAGCG GCGCTATATC
AACGATGCCC TGCGCCTGCT CTTCGAGCTC GGGGCGGTGG ATGAAGGTCG CGAACTCACG
GACCTGGGCC GCCGTCTGGC GCGGATCCCG GCGGACCCGC GCATCGGCCG CATGCTCCTC
GCTGCCCGCG AGGCCGGTGT CCAGCGCGAG ATCCTGATCA TCGCTGCGGC ACTGTCCGTG
CAGGATCCCC GCGAGCGGCC CATGGAGGCG CAGGAGGCCG CCGATCGGGC CCACGCGCGG
TGGCACGATC CGAAGAGCGA TTTCGCCGCC CTGCTGCGAC TCTGGGACGA TTACCAGGCG
CAGCGCCGCG GCCTTTCCCG GCGCAAGCTC ACCCAGTGGT GCCGCGAGCA TTTTCTGGCC
CCGCAGCGCA TGCGCGAGTG GGCCGATATC CGACGGCAGT TCGCCGAGAT GCTCAAGGAG
GCGGAACGCC TCCGCAGCAG CGGGGCCGGG GAGGCGCAGG ACGCCACGCC TACGGCCCGG
ACCGCGGAGG CAGAGTTCCC CTACGAGGCG GTCCACCGGG CCCTGCTCAC CGGCCTGCTC
AGCCAGGTGG CCACCCTCCA CGAGGACCGC ATCTACCTGG GGGCACGCGG CGTCAAGCTG
CAGATCTTCC CCGGTTCCGT GCTGGCACGG CGCCGGCCGA AGTGGATCGT CGCCGCTGAG
CTGATGGAGA CCAGTCGCCT CTTCGCCCGC ACGGTCGCCG AGATCCGCCC GGAGTGGGTG
GAACAGCTTG CCGGCCATCT GGTCTCGCGC AGCTACGGTG AGCCGCGCTG GGAGAAGCGC
GCCGGGCGCG TCGTTACAGA AGAGCAGGTG AGCCTGTTCG GACTGACCCT GGTCGCCGGA
CGCAAGGTCG ACTACGGGCG CATCGACCCG CAGGAGGCGC GGCGGTTGTT CCTGCGCGAT
GGTCTGGTCG CCGGCGAGAT CCGCACCCGT GGCGCGTTCC TGGCCCACAA CCAGGCCCTG
GTCGACGAGG TGGAGCGCCT CGAGGCCAAG GCGCGGCGCC GTGACGTGCT CGTCGACGAG
GAGCAGCTGG TGGCCTTCTA CGACGCCCGC CTCCCGGCGC ACATCCGCGA CGCTCCGGCC
TTTGAGCGCT GGCGGCGGCG GGCGGAACGC GACGACCCCC AGTGCCTGCA CATGACCCGC
GAGGCGCTGA TGCGCCGGGA GACGGACGAC ATCTCGGCGG AGCAGTACCC GGATCGGCTG
ACGGTGGCCG GGGTGGAGGT GGCCCTGGAG TACCACCTGG AGCCGGGCAG CGAGCGGGAT
GGGGTGACCG CGCTGATCCC GGTGGCGGCG CTCAACCAGC TGCCGCCCGA GCCCTTCGAA
TGGCTGGTGC CGGGGCTGCT GCAGGAGAAG GTGACCGCGC TGATCCGCGG ATTGCCCAAG
GCCCTGCGCA AGCACTTTGT GCCGGCGCCG GATTTCGCCC GCGCCGTGCT CGAGGCCGTG
CCCCATCGCG AAGGGGCGCT GACCGACGCG GTGGCCCGCC ACCTGCAGCG TGTCACCGGG
GTGGAGCTGC CGCCGGGTGC CCTGGAGGCC GTGGATCTGC CGGAGCACCT GCGTATGGCC
TTCCGTGTGG TGGATCGCGA CGGCCACACC CTGCAGGAGG GGCGTGACCT GCTCGTCCTG
CAGGCGGGGC TGAGCGAGGC GGCCAGCGAG GAGTTTGCCG TCGCCGGCGG TGGCAGCGGG
GCCGGCCCCG GTGCCGAGTG GCACCGCGAA GGCATCACCA CCTGGGACTT CGGGCCGCTG
CCGGAATCGG TGGTACTGGA AGAGGGCGGT GTCCGCTTCC ACGGGTACCC AGCGCTGCGG
GACGACGGCG ACTCGGTGAC GCGGCTCCTG CTCGATGCTG CCGAGCCCGC CGCGGCGCAG
ACCCACGCCG GGGTGCGCCG GCTGTTCATG CTGGCGTTGC CGCAGCAGGT GCGGGCGCTG
CGCAAGCTCG ATGAACTCAA GGCCCTGCGG TTGAAGTACC GCGGTCTGGG CAGCGATGAC
GAGCTGCGCG ACGCGCTGCT GCGGGCGGTC TTCGACCGCT GTTTCCTCGC CGACGGGCTG
CCCCGGGATG CCGACACCTT CGAGGACCGC CTGGCCGTCG GGCGTGGCGA ACTGGTGCCG
CGCGCCCAGT CGCTGTGCGC CGCCCTGGAC GACGTCCTGA CCCGTTACCA GTCGCTGCGC
AAGGCGCTGA AACAGCTGAA CAGCCCGGCG TTGCTCGAGA GCCTGCGGGA TGTCGACGAG
CACCTGAACA GCCTGGTCTA CCCCGGCTTC CTGGAGGACC TCCCCCCGCA GCGCCTCGAC
GAGTTGCCGC GCTACCTGCG CGGCCTCGAG CGCCGGGTCG AGAAACTCAG ACTCGACCCG
GCCAAGGATC GCGCCCCGCT GCGCACCATC CGTCCCTGGC ATGAGCGGGT GCACCAGCGT
CTGGCCGCCC GGGCCGAGCG CGGGGTGCCG GATCCGGTCC TGCAGCGACT GCGCTGGATG
CTGGAGGAGT ACCGGATCTC GCTGTTCGCC CAGGACGTGG GTGCGCGGGA GAAGGTCTCG
GAAAAGCGCC TCCAGGAACT CTGGCGGGAG GTGGCGTGA
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| Protein sequence | MGGVPRQLRE LRQRIEGAFG PQRPPLRRRL AGLERCARQG RPFDRGVARL EQDLADSEAE
VTRRRSEAIA LEYDPDLPVV QRREELLEAL REHQVVVVCG ATGSGKSTQL PKMCMELGLG
TRGLIGHTQP RRIAARALAE RLAEETGTRV GETVGYKVRF TDQVGEQSRV KLLTDGMLLA
EIQSDRHLDA YDTLIIDEAH ERSLNIDFIL GYLKRLLPRR PDLKVIVTSA TIDPERFAEH
FDGAPVREVS GRTYPVEIRY RPYEEREGVE QPQAVTEAVH ELAREGRGDV LVFLSGEREI
RECAEALRKN PPRGTEILPL YARLSSAEQQ RVFHPGSGGR RVVLATNVAE TSLTVPGIRY
VVDTGRARIS RYSHRTKVSR LPVEPIAQAS ADQRAGRCGR EAPGICIRLY SEEDYESRPR
YTDPEILRTN LAGVILQMKA MGLGDIERFP FVEPPERRYI NDALRLLFEL GAVDEGRELT
DLGRRLARIP ADPRIGRMLL AAREAGVQRE ILIIAAALSV QDPRERPMEA QEAADRAHAR
WHDPKSDFAA LLRLWDDYQA QRRGLSRRKL TQWCREHFLA PQRMREWADI RRQFAEMLKE
AERLRSSGAG EAQDATPTAR TAEAEFPYEA VHRALLTGLL SQVATLHEDR IYLGARGVKL
QIFPGSVLAR RRPKWIVAAE LMETSRLFAR TVAEIRPEWV EQLAGHLVSR SYGEPRWEKR
AGRVVTEEQV SLFGLTLVAG RKVDYGRIDP QEARRLFLRD GLVAGEIRTR GAFLAHNQAL
VDEVERLEAK ARRRDVLVDE EQLVAFYDAR LPAHIRDAPA FERWRRRAER DDPQCLHMTR
EALMRRETDD ISAEQYPDRL TVAGVEVALE YHLEPGSERD GVTALIPVAA LNQLPPEPFE
WLVPGLLQEK VTALIRGLPK ALRKHFVPAP DFARAVLEAV PHREGALTDA VARHLQRVTG
VELPPGALEA VDLPEHLRMA FRVVDRDGHT LQEGRDLLVL QAGLSEAASE EFAVAGGGSG
AGPGAEWHRE GITTWDFGPL PESVVLEEGG VRFHGYPALR DDGDSVTRLL LDAAEPAAAQ
THAGVRRLFM LALPQQVRAL RKLDELKALR LKYRGLGSDD ELRDALLRAV FDRCFLADGL
PRDADTFEDR LAVGRGELVP RAQSLCAALD DVLTRYQSLR KALKQLNSPA LLESLRDVDE
HLNSLVYPGF LEDLPPQRLD ELPRYLRGLE RRVEKLRLDP AKDRAPLRTI RPWHERVHQR
LAARAERGVP DPVLQRLRWM LEEYRISLFA QDVGAREKVS EKRLQELWRE VA
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