Gene Hhal_1269 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_1269 
Symbol 
ID4710602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp1376249 
End bp1378291 
Gene Length2043 bp 
Protein Length680 aa 
Translation table11 
GC content71% 
IMG OID639855742 
Productexodeoxyribonuclease V, alpha subunit 
Protein accessionYP_001002846 
Protein GI121998059 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01447] exodeoxyribonuclease V, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGTGC GGGTCGATCA GGAGGCGATC CTCAGGTGGC TGCGTGAGGC CGAGGCGCTG 
GGCTGGCTGC GCCCGTTGGA TGGGGCCCTG GCGGAGTTCC TGCGTGAGCA GGTGCCCGAT
GCGCCGCCGC TGCTGTTGCT GGCCGCAGCG CTGACCAGTC ATCAGGCGGG CCGTGGGCAT
GTCTGCCTGG ATCTCGATCA GCTCTGGGAA CGGGCCGAGC CGGTCCTGAG CCTTCCGCCG
GAGACCGTTG ACGCGCCCGA GCCGGTGAAA TCGCCCGCGG CACTCCTGGA CGCCGCCGGC
GGTCGCGATG CGTTCGAGCG GCAATTGGAG TGCCCGGAAC TGGTGGGCAG AGGCCCCGGT
TCCACACCGC TGGTCCGCGA CGGACCGAGG CTCTATCTGC GCCGCTACTG GGCCTGCGAG
CGCACCATCG CACGGGTGGT GCAGCAGCGC GTGGATGCAG CGGCGCAGTG GCGCGCGCAG
CTCGACCCGG CCACGGTCCG GCGCTGGCTG GATGGGTTGT TCGGCGCGCC TGGGGGCGAT
GGCCCGGATT GGCAGCGGGT CGCCTGTGCC GTGGCCGCCG GCAGTGGTTT CAGTGTTATC
ACCGGCGGAC CGGGTACCGG CAAGACTACG ACGGTGTTGC GTCTGCTGGC GTTGCTGCAG
GGGCTCCACG GCGGGGCCCT GCGCATCCGC CTGACGGCCC CCACCGGCAA GGCGGCGGCA
CGGCTGAACG CGAGCATCGC CGGGGCGGTG GATCGGCTGG GGCTGGAGGA GCTGGACGGC
GGCGCCGAGC TGCGCGCGCG GATACCCACC GAGGTGGTGA CAGTGCACCG GCTGCTGGGC
GCAGGCGGTG GACGGCGCTT TCGCCACCAC GCCGGGGAAC CCCTGGCCGC GGATGTGGTG
GTCGTGGATG AAGCGTCGAT GATCGACGTG GAGTTGATGG CGGCGTTGCT GGAGGCCCTG
CCGGATGGGG GCCGTCTGGT GCTGCTTGGT GACAAGGACC AGTTGGCCTC GGTGGAGGCC
GGGGCCATCC TTGGCGAGCT CTGCGCCCGG GCAGATCAGG GCGGTTATTG GCCCGATACC
GCCGAGTGGC TAGAGGCGGT CAGCGGCCAG TGCATCCCGT CGGCGCTGAT CGATCCCACC
GGCGGTGGTC TCGACCAGCA TGTCGTCATG CTTCGGCACA GCCACCGGTT CGGTGCCGAC
AGCGGGATCG GGCGCTTGGC TCGGGCGGTG AATGCCGGTG ATCAGGCGGC GGTCGAGGCT
TGGGGGTATG GGCACGAGGG CGATCTGGCG CGGGTGCAGC TTGCCGACGG AGAGCAAGAC
CCGACGCTGA TCCACTGGGC GGTGGACGGC GGGCAGACCG GCCTGGGCTA CGCCGCTTAT
CTGAGCGACA TCCAGGAACT GCGACCGGGC CCGGATGCCT CCGCTGGGGA GTACGCCGGC
TGGGCCTCGC AGGTGCTGGA GACGCACGGG GCGTTCCAAT TGCTGGCGGC GCTGCGGCGC
GGACCGTACG GGGTCGAGGC CCTCAATGAG CGCCTTGCCG CGGCGCTGCG CCAGCGGGGG
CTGATCCGAG GTGAGGGGGC CTGGTACGAG GGCCGACCGG TGATCGTCAC GCGCAACGAT
TACGGCCTGG GGCTGATCAA CGGGGATATC GGCATCGCCC TGCGCGTCCC GCGCTTCCTG
GTGCAGAGCC CGGAGGCGGG GGGTGCCGGG GAGGAGCGAC AGAAGGTGCT GCGTGTCGCC
TTCCGCGCCG CCGATGGCAG CGGACGCATC CGCTGGGTCC CGCCCCATCG GCTGGAGTCC
GTGGAGACGG CATTCGCCTT GACGGTGCAC AAGGCCCAGG GTTCGGAGTT TCGCCACGCA
GCCTTATTGC TGCCGGATCG GCCCAGTCCG GTGCTCACCC GTGAGCTCCT CTACACCGGC
ATCACCCGGG CCAGTCAGTG GTTCACCCTG CTGGAGCCGC AACCGGCCGT GCTGAAGGCG
GCGGTGCGCC AGCGAACCGT TCGTGGTGGC GGCCTGCGGG CCATGCTCGA GGCTGCTGGC
TAG
 
Protein sequence
MSVRVDQEAI LRWLREAEAL GWLRPLDGAL AEFLREQVPD APPLLLLAAA LTSHQAGRGH 
VCLDLDQLWE RAEPVLSLPP ETVDAPEPVK SPAALLDAAG GRDAFERQLE CPELVGRGPG
STPLVRDGPR LYLRRYWACE RTIARVVQQR VDAAAQWRAQ LDPATVRRWL DGLFGAPGGD
GPDWQRVACA VAAGSGFSVI TGGPGTGKTT TVLRLLALLQ GLHGGALRIR LTAPTGKAAA
RLNASIAGAV DRLGLEELDG GAELRARIPT EVVTVHRLLG AGGGRRFRHH AGEPLAADVV
VVDEASMIDV ELMAALLEAL PDGGRLVLLG DKDQLASVEA GAILGELCAR ADQGGYWPDT
AEWLEAVSGQ CIPSALIDPT GGGLDQHVVM LRHSHRFGAD SGIGRLARAV NAGDQAAVEA
WGYGHEGDLA RVQLADGEQD PTLIHWAVDG GQTGLGYAAY LSDIQELRPG PDASAGEYAG
WASQVLETHG AFQLLAALRR GPYGVEALNE RLAAALRQRG LIRGEGAWYE GRPVIVTRND
YGLGLINGDI GIALRVPRFL VQSPEAGGAG EERQKVLRVA FRAADGSGRI RWVPPHRLES
VETAFALTVH KAQGSEFRHA ALLLPDRPSP VLTRELLYTG ITRASQWFTL LEPQPAVLKA
AVRQRTVRGG GLRAMLEAAG