| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1268 |
|---|
| Symbol | |
|---|
| ID | 4710601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 1374356 |
|---|
| End bp | 1375966 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639855741 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_001002845 |
|---|
| Protein GI | 121998058 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.438746 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCCG CAACCACCCG TCCGCCGACC CCGGACCAGA CCCGCGACAC CAGCACCTGC
CCGCTCAGCC AGGCTGTCCG AGAGCGCGCC TGCGCTGCGG CCGGCCCGTT CCCGGCCTCG
CATCGGGTCT ACCTGCAGGG AAGCCGGGAT GATCTGCGGG TGGCCCTGCG AGAGATCGTC
CAGAGCCCAA CCCAGACCCC GAACGGACCG CGCGAGAATC CGCCGCTGCG GGTCTACGAC
ACCGGCGGCC CGTACACGGA CCCCGAGGCG GAGCTCGACC CGGCGCGGGG GATCCACCCG
ATCCGTGCCC CCTGGATCGC CGACCGCGGC ACCGACGCGT GCACCCAGCT CGACTACGCG
CGGGCTGGAG TGACCACCCC GGAGATGGAG TACATCGCCC TGCGTGAGGG CCTGTCGGCC
GAGTTCGTGC GCGATGAAGT CGCCCGCGGG CGGGCCGTGA TCCCGGCGAA CCACTGCCAC
CCGGAGGCCG AGCCAATGGC CATCGGCCGC CATCTCAAGG TCAAGGTGAA CGCCAATATC
GGCAACTCCC CGCTGAGCTC CGGCATCCCG GAGGAGCTGG AGAAGCTCAT CCACGCCGTG
CGCTGGGGGG CCGATACGGT CATGGACCTA TCCACCGGCG AGGCCATCCA CGAGACCCGC
GCCTGGCTGC TCCGCAACTC GCCGGTGCCG ATCGGCACCG TACCGATCTA CCAGGCGCTC
GAGAAGGCCG GCCGCCCCGA AGACCTGACC TGGGAGGTGT TCCGCGACAC CCTCATCGAA
CAGGCCGAAC AGGGCGTGGA CTACTTCACC ATCCACGCCG GCGTGCGGCA TGGCCACGTC
GATCTGGCCC GCGGGCGGTT GACCGGAATC GTCTCCCGCG GCGGGTCGAT CATGGCCAAG
TGGTGCAGCC ACCACCAGGC CGAGAGCTTC CTCTACGAAC GTTTCGATGA GATCTGCGAG
ATCCTGGCCC GCTACGACAT CACCGTCTCG CTCGGTGACG GCCTGCGCCC TGGTTCTGTC
GCCGATGCCT CCGACGAGGC GCAGCTGGCC GAGCTGCGCA CCCTGGGCGA ACTCACGGAA
CGCGCCTGGG CGCGCGGCGT GCAGGTCATT ATCGAGGGGC CGGGTCACAT CCCCATGAAC
CAGATCGAGG AGAACATGCG GCTACAGAGC GAGGCCTGCC TCGAGGCGCC GTTCTACACC
CTCGGCCCCA TCGTGACCGA CATCGCTCCC GGCTACGACC ACATCACCTC GGCCATCGGC
GCCGCCCAGA TCGGCTGGCA CGGCACAGCG ATGCTCTGCT ACGTGACCCC CAAGGAGCAC
CTGGGCCTGC CCAATGCCGA CGATGTGCGC ACCGGCATCG TCACGTACAA GGCGGCGGCC
CATGCGGCCG ACGTGGCCCG CGGGCACCCC GGGGCACGCG ATCGTGACGA TGCCCTCTCG
CGCGCCCGTT ACGAGTTCCG CTGGGAGGAT CAGTTCAACC TCTCCCTGGA TCCGGAACGG
GCCCGCGCCT ATCACGACGA GACCCTGCCC AAGGCGTCCC ATAAGGAGGC GGCGTTCTGC
TCGATGTGCG GGCCCCGCCA CTGCGCCATG GCGATCAGTC AGGAACTCTG A
|
|---|
| Protein sequence | MDSATTRPPT PDQTRDTSTC PLSQAVRERA CAAAGPFPAS HRVYLQGSRD DLRVALREIV
QSPTQTPNGP RENPPLRVYD TGGPYTDPEA ELDPARGIHP IRAPWIADRG TDACTQLDYA
RAGVTTPEME YIALREGLSA EFVRDEVARG RAVIPANHCH PEAEPMAIGR HLKVKVNANI
GNSPLSSGIP EELEKLIHAV RWGADTVMDL STGEAIHETR AWLLRNSPVP IGTVPIYQAL
EKAGRPEDLT WEVFRDTLIE QAEQGVDYFT IHAGVRHGHV DLARGRLTGI VSRGGSIMAK
WCSHHQAESF LYERFDEICE ILARYDITVS LGDGLRPGSV ADASDEAQLA ELRTLGELTE
RAWARGVQVI IEGPGHIPMN QIEENMRLQS EACLEAPFYT LGPIVTDIAP GYDHITSAIG
AAQIGWHGTA MLCYVTPKEH LGLPNADDVR TGIVTYKAAA HAADVARGHP GARDRDDALS
RARYEFRWED QFNLSLDPER ARAYHDETLP KASHKEAAFC SMCGPRHCAM AISQEL
|
|---|
| |