| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1257 |
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| Symbol | |
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| ID | 4711121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 1363268 |
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| End bp | 1366711 |
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| Gene Length | 3444 bp |
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| Protein Length | 1147 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639855730 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001002834 |
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| Protein GI | 121998047 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.230651 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTGCTCG GCGACCTGCC CCTCCCCCAA CGTCCCGCCG AGCGGCGGGA CTGGTCCGGG
CTGCTCGGCG CTGCCCAGCC GCTGGCCATC GCCGAGGCCG CCCGGCAGCA CGACGGCCCA
GTCATCGCCG TTACCGGGAC GCCGCAGCAG GCCGCCGCCT TGCAGGAGGC GGTCGGCTTC
TTCCTCGGCG ATGACGTGCC GGTGCTCGGT TTCCCGGACT GGGAAACCCT GCCCTACGAT
GTCTTCTCCC CGCATCAGGA CATCATCTCG GAGCGCCTGC TCGGGCTCTA CCGCCTGCCG
GCGATGACCC GGGGCGTGCT GGTGGTCCCG GCGGCCACGC TCATGCATCG CTTACCGCCG
CGCGGCTGGT TAGAGGGCCG GTCGCTGATG CTGCATCCGG GCGACCGATT GGAGATCGAG
CCCATGCGCC GCCGCCTGGA GGCCGCCGGC TATCGGTGCG TGCCGGAAGT AGGCGAGCAT
GGCGAATTCG CGGTGCGCGG CGCCCTGCTC GACCTCTTCC CCATGGGCGG CGAGACGCCG
TATCGCATTG ACCTGTTCGA CGACGAGGTG GAGAGCCTGC GCCGCTTCGA CCCGGAGACT
CAGCGCACCA CGGATCAGGT CGATGCCATC GAGCTGCTGC CGGCCCGAGA ATTCCCGACG
GACGAAGGCG GCATCACCCG TTTCCGCCAG GCATTCCGCG CCGAGTTCGA GGGCGATCCA
GCGCGCAGCT TCCTCTATCG CGCCGTCAGC GAGGGCCGCA TTCCCGGCGG GATCGAATAC
TACCTGCCGC TGTTCTTCGA AGAGACGGCC ACGCTGTTCG ACTACCTGCC CGAGGGCACC
CTGGCCATCC GTCTCGAGGG CACCGACGCC ACTGCAGACG GTTTCTGGCA GCAGGTCCAG
GACCGTTACG AACAGCGCAC CGGAGACATG GATCGCCCGC CCTTGCCTCC GCGACGCGTC
TTCCTCGACG GGGACGAGCT GCGCGCCGGG CTCAACCGCC GCCCGCAGGT GGTCCTACAC
GGCGAGCCGG GGCGCGGGAG CGACGCCGAC GTCGACGCAC TCCCCGAGCT GGCAGCTCGC
CCGCAGGCGG ACCGACCGTT GGAGCGACTC GAACAGTTCC ACGCCGGCTA CCCGGGGCGG
ATTCTGTTCA CCGCCGAGAG CGCCGGACGT CGGCAGGGGC TGCAGGAACG ACTGACCCGG
TCCGGGATCG AGGCCCGATC GGTTCAGGGT TGGCGCGACT TCCTCGACGG CGACGTGCCG
GCGGCCATCA CCGTCGCGCC GCTGGAGACA GGCGCGCGCA TCGACGGCAT CGCCATCATC
CCGGAGAGCG CACTCTACGG CGAACGCGCT CGACAGAGCC GGCGACGCCG CTCGAGCGCC
TCGACGGACC CGGCAGCGGT CATCCGCGAC CTCTCCGATC TGCACGAGGG CGCCCCGGTC
GTCCACGAGG ACCACGGGGT GGGCCGCTAT GTCGGCCTGC AGAGCCTCAG CGTGGGGGAT
GTCACCACCG AGTTCCTCAC CCTGGAGTAC GCCGGCGGTG ACAAACTGTA CGTGCCGGTC
TCGGCTCTGG ATCGCATCTC CCGCTACACC GGCGCCGACG CCGACGAGGC TCCTCAACAC
CGCCTGGGCA GTGATCAGTG GGACAAGGCG CGCCGCCATG CGGCCAAGCG CGCCCGCGAT
GTCGCCGCCG AATTGCTCGA TCTTTACGCG CGGCGTCAGG CCCGGGCCGG CGATGCCTGC
CTGTTCGATG ACGAGGCCTA CGAAGCCTTT GCGTCCGCCT TCCCCTTTGA GGAGACCCCG
GACCAACAGG CCGCCATCCA GGCCGTCCTC GATGACCTGC GCTCCGACCA GCCCATGGAC
CGGGTGGTCT GCGGCGATGT CGGCTTCGGC AAGACTGAGG TCGCCATGCG CGCGGCCTTC
GCCGGCGTTC AAGCGGGGCG ACAGGTGGCC ATGCTGGTGC CGACGACCCT GCTGGCCCAG
CAGCACTATC AGAACTTCGC CGACCGCTTC GCTGACTGGC CGGTGCGGAT CGAGTCGCTG
TCGCGCTTTA CCGGCAAGAA GGGCAACGAG AAGACGCTGG CACGGATTGC CAGCGGCGAG
GCCGACGTGG TCATCGGCAC CCACAAGCTG CTCGGCAGTG AGGTCCAGTT CAAGAACCTG
GGCCTGGTCA TCATCGATGA GGAGCAGCGG TTCGGGGTCC GGCAGAAGGA ACGGCTTAAG
CGACTGCGCG CCGAGGTCGA TGTCCTGACC CTCACCGCCA CGCCGATACC GCGCACCCTG
AACATGTCCA TGGCGGGGAT CCGGGATCTG TCCGTCATCG CCACCCCCCC GGAACGCCGC
CTGGCGGTGA AGACCTTCGT TCAAGAGTGG AGCGATGGTC TCATCCGTGA GGCGTGTCAG
CGGGAGCTCC AGCGCGGCGG GCAGGTCTAC TTCCTCTACA ACGACGTGAA GTCCATCGAG
CGGACTGCCA ATCAGCTGCG GGACCTGATG CCGGAGGCAC GCATTGGCGT CGCCCACGGC
CAGATGCGCG AACGGGAGCT CGAGCAGGTG ATGCTCGACT TCTACCACCA GCGCTTCGAT
ATCCTGGTCT GCACGACAAT CATCGAGTCG GGGATCGACA TCCCCACGGC CAACACCATC
ATCATCCACC GGGCGGACCG ATTCGGGCTG GCCCAGTTGC ACCAGCTCCG CGGTCGCGTG
GGGCGCTCCC ACCATCGCGC CTATGCCTAT CTACTCGCGC CGCCGCCGAA CGCAATGACC
GCCGACGCGC TTAAACGGCT GGAGGCCATC TCGCAGCTCG AGGATCTGGG CGTTGGATTT
GCCCTCGCCT CCCACGACCT GGAGATCCGC GGCGCCGGCG AGCTGCTCGG TGATGAACAG
AGCGGGCAGA TCCAGGAGGT CGGGTTCACG CTCTACAGCC AGCTGCTGGA ACGGGCAGTC
AAAGACCTCA AGGCCGGGCG GGACCCCGCT CCGGAAGCCG AGCTCGACAC CGGCGTGGAG
GTCGATCTGC GCCTGTCCGC GCTGCTCCCG GCGGATTACC TGCCGGACGT ACATACCCGC
CTGGTTCAGT ACAAACGGAT CAGTAGCGCC CGCAGTGATG CCGAGCTCGA GGAGCTGCAG
ATCGAGATGA TCGACCGCTT CGGGCTGCTG CCCGATGCGG CGCGCAACCT CTTCCGCACG
GCCTCTCTCA AACTCCGGGC CGAGGCGCTG GGCATCCGCA AGGTCGAGGC GGGCCCCTCC
GGCGGCACGA TCCACTTCGG CCCGCAGCCG CAGATCGATC CCGGGCGCCT GGTGCAGATG
GTCCAGCAGG AACCGGGCAA GTACCGCCTG GACAATCAGC AGCGGCTGCA CCTCAGCGAT
GACCTGAGCG ACGAGACGGC CCGATTCGAG GCGATGGAGC GGCTTCTGGA GAGACTCCAC
GCCAGCGAGG AGGTAGCGGG ATGA
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| Protein sequence | MLLGDLPLPQ RPAERRDWSG LLGAAQPLAI AEAARQHDGP VIAVTGTPQQ AAALQEAVGF
FLGDDVPVLG FPDWETLPYD VFSPHQDIIS ERLLGLYRLP AMTRGVLVVP AATLMHRLPP
RGWLEGRSLM LHPGDRLEIE PMRRRLEAAG YRCVPEVGEH GEFAVRGALL DLFPMGGETP
YRIDLFDDEV ESLRRFDPET QRTTDQVDAI ELLPAREFPT DEGGITRFRQ AFRAEFEGDP
ARSFLYRAVS EGRIPGGIEY YLPLFFEETA TLFDYLPEGT LAIRLEGTDA TADGFWQQVQ
DRYEQRTGDM DRPPLPPRRV FLDGDELRAG LNRRPQVVLH GEPGRGSDAD VDALPELAAR
PQADRPLERL EQFHAGYPGR ILFTAESAGR RQGLQERLTR SGIEARSVQG WRDFLDGDVP
AAITVAPLET GARIDGIAII PESALYGERA RQSRRRRSSA STDPAAVIRD LSDLHEGAPV
VHEDHGVGRY VGLQSLSVGD VTTEFLTLEY AGGDKLYVPV SALDRISRYT GADADEAPQH
RLGSDQWDKA RRHAAKRARD VAAELLDLYA RRQARAGDAC LFDDEAYEAF ASAFPFEETP
DQQAAIQAVL DDLRSDQPMD RVVCGDVGFG KTEVAMRAAF AGVQAGRQVA MLVPTTLLAQ
QHYQNFADRF ADWPVRIESL SRFTGKKGNE KTLARIASGE ADVVIGTHKL LGSEVQFKNL
GLVIIDEEQR FGVRQKERLK RLRAEVDVLT LTATPIPRTL NMSMAGIRDL SVIATPPERR
LAVKTFVQEW SDGLIREACQ RELQRGGQVY FLYNDVKSIE RTANQLRDLM PEARIGVAHG
QMRERELEQV MLDFYHQRFD ILVCTTIIES GIDIPTANTI IIHRADRFGL AQLHQLRGRV
GRSHHRAYAY LLAPPPNAMT ADALKRLEAI SQLEDLGVGF ALASHDLEIR GAGELLGDEQ
SGQIQEVGFT LYSQLLERAV KDLKAGRDPA PEAELDTGVE VDLRLSALLP ADYLPDVHTR
LVQYKRISSA RSDAELEELQ IEMIDRFGLL PDAARNLFRT ASLKLRAEAL GIRKVEAGPS
GGTIHFGPQP QIDPGRLVQM VQQEPGKYRL DNQQRLHLSD DLSDETARFE AMERLLERLH
ASEEVAG
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