| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1249 |
|---|
| Symbol | |
|---|
| ID | 4710485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 1355204 |
|---|
| End bp | 1357336 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639855722 |
|---|
| Product | ComEC/Rec2-related protein |
|---|
| Protein accession | YP_001002826 |
|---|
| Protein GI | 121998039 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0658] Predicted membrane metal-binding protein |
|---|
| TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein
[TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.435974 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGCAG GATCGCTTGC CTTCGCGGCC GGAATCGTAC TGGTCGTGAG CGTGTTACGG
GAGCCCCCCG GGGCCTTCTC GGTGGCAGCA GTGGCCGCCT CCGGGGTCGT GTGGGGTCTG
CTCGCCCCGC GCGGCTGGCG CTGGCCGGCT GCCGGGCTCC TAGGCTGCGC CTGGGCGCTG
CTCAGTGCCT GCTGGCTTTT GGCCCATGAA CTTGCCCCTA GCCATGACGG CACCGACGCC
TGCCTGGAAG GGCAGGTCGT TTCCGTCCCT GAGATTGAGA GTCACCGTGC TCGCTTCGAG
TTCCGGCCTG ACGGCGTGCT CGATGGCGAG CTGCTGGAGC CATTGCCGCG ACGCATCCGC
GTGGATTGGT ATGGGGCGAC GGAGGAGCCA GCGCCGGGGG AGCGCTGGCA GCTGTGCCTT
CGCCTGCGCG CCCCCGATGG ATTCCTCAAT CCGGAGGGCT TCGATTACCA GCGGTGGCTG
TTCCAACGCC GGATCGGCGC GACGGCCTAT GTGCGGGAAG CGGAGCAGGC CGAACGCCTG
TCCGGCGGCT GGCGAATCGA TAGCGTGCGG ACTCGGATCG CCGACGCCAT GGCCGAGCGG
CTCGGCGATT CGCGGTACCT GGGCTTGGTC CAAGGGCTGG GCGTGGCCGT GCGCGATAGG
ATCGGCGATG ACCAGTGGGA GGTGCTTTCG GTCACCGGGA CGGCCCACCT GCTAGCGATC
TCGGGGCTGC ATATCGGTCT GGTTGCCGGC CTCGCCGGCA CGCTGGCCGG CGGACTCTGG
CGTGTGGTTC CGTCGCTGGT TCGCCGGGTT CCCGCCCTGA TTGCCGGCAC CCTGGCCGGG
GCGCTGGCTG CAGCCGGTTA TGCCGCCCTG GCCGGCTTCA CCCTACCCAC TCAGCGCGCG
CTGCTCATGG TGCTGGTCTT CGCCGGCGCG CTCCTGCTGC GCCGCCCGTT AAGCCCCTGG
CACAGCCTCG CCGTGGCGGC TGCCGCGGTG CTCGCCCTCG ACCCCTGGGC GCCGCTGGGG
GCGGGGTTCT GGCTCTCCTT CGGGGCGGTG GCGATCATCC TGGCAGCTAC AACGGGTCGC
CCGATGCAGC GCGGTCCCCT ACCATGGCTG CGGATCCAGG TGCTGGTGGG GGTCGGCATG
CTACCAGCGA CTGCGGTCTG GTTCGGGCAC CTGCCGCTTC TCTCGCCGCT GGCCAATCTC
GTAGCCGTGC CCTGGGTCAG CGTATCGGTT GTCCCCCTGA TCCTGACCGG AGTCGCGCTC
CAGCCCGTGG TGCCAGAGTG GTCCGGCGGG TTGTGGCAGG GTGCGGATGC CGCCCTCGGG
GTGCTGATGC GTGTGCTCAG CGCGCTGGCC GAGTTCCTCG GTGCCGTTGA GGTGCCCACC
CCATCGGTCG GAGCGGTGGC GCTGGCCGCT GTCGGTGTGG CTCTGGTGCT GGCTCCTCGG
GCCGTGCCCG GGCGGTGGCT GGCTGGGCCG TTATTGGCGT TGTTGCTCCT GGGGCCCGGC
AGTAGCGGAG GCGGTCCCTC CGGCCGCGTG GTGGTCTTCG ATACCGGCGG AGGTCTGACC
GCTCTGGCCT GCGATGGCCG TCAAGCGGTG GTCTACGGCG GGGGTCCCGG AGGGGGGCTC
GACGCGGCGA GCGTTGCTGT CGAGCCGTTT CTCGAAGCCC GGGGGCTGAC CCTCAAGGCC
TGGCTGGTGC CGCGCGAGCA GGCCCCCTGG GATGGCGCCG TCGCCGAGGC GCGGCAGCGT
TGGGACGATG CCGAGTGGCG GGGGGCTGGA CAGGATACGA CGGCCGAGGC GACGGAGTGG
TCCCTGGGGC GGCTGACGCT GCAGGAGACG CCCCTCGGCG ACGAAGAGTG GGGCCTGGAT
GTCGAGGGAG AGGCGGGTAC CGTATCGCTG CGACCGGACC TGGAGAACGA CACGAAGGGG
TTGGTTGTCG GCGCCGCCGG ATGTGACGAG GACCGCCAGG CGTGCAGTGC GGCGGTTGAG
TTGAAGGACG GTCGTTTGTT GCGTTCGGAC GAGCAGGGCG CGCTGACTTT GATCGAAGAC
GGCGATGCGT GGCGGGTAGA CAGTGAGCTG CAGCGCAGGG GGCGGGTTTA CCATCAGGCC
AGTCCGGCTG CGTTGGCGCC CGGGATGCTT TAA
|
|---|
| Protein sequence | MRAGSLAFAA GIVLVVSVLR EPPGAFSVAA VAASGVVWGL LAPRGWRWPA AGLLGCAWAL
LSACWLLAHE LAPSHDGTDA CLEGQVVSVP EIESHRARFE FRPDGVLDGE LLEPLPRRIR
VDWYGATEEP APGERWQLCL RLRAPDGFLN PEGFDYQRWL FQRRIGATAY VREAEQAERL
SGGWRIDSVR TRIADAMAER LGDSRYLGLV QGLGVAVRDR IGDDQWEVLS VTGTAHLLAI
SGLHIGLVAG LAGTLAGGLW RVVPSLVRRV PALIAGTLAG ALAAAGYAAL AGFTLPTQRA
LLMVLVFAGA LLLRRPLSPW HSLAVAAAAV LALDPWAPLG AGFWLSFGAV AIILAATTGR
PMQRGPLPWL RIQVLVGVGM LPATAVWFGH LPLLSPLANL VAVPWVSVSV VPLILTGVAL
QPVVPEWSGG LWQGADAALG VLMRVLSALA EFLGAVEVPT PSVGAVALAA VGVALVLAPR
AVPGRWLAGP LLALLLLGPG SSGGGPSGRV VVFDTGGGLT ALACDGRQAV VYGGGPGGGL
DAASVAVEPF LEARGLTLKA WLVPREQAPW DGAVAEARQR WDDAEWRGAG QDTTAEATEW
SLGRLTLQET PLGDEEWGLD VEGEAGTVSL RPDLENDTKG LVVGAAGCDE DRQACSAAVE
LKDGRLLRSD EQGALTLIED GDAWRVDSEL QRRGRVYHQA SPAALAPGML
|
|---|
| |