| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1230 |
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| Symbol | |
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| ID | 4710438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 1335907 |
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| End bp | 1337559 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639855703 |
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| Product | 60 kDa inner membrane insertion protein |
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| Protein accession | YP_001002807 |
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| Protein GI | 121998020 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0120976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGAATC AACGCCTCAT CCTCCTGATC GCCCTGGCCG GGATCAGTCT GCTGCTGTAC
TTCGCCTGGG AGCGGGAGCA GATGGACCCT GCGGAGCCGG TGGTTGAAGA GCAGGAGTCG
GAAGTCGATC AGGAGGCGCC GGACGCGCCG TCCCGGGCCG AGGAGCCGGA CGCTGGGGAC
CCCATGGCTG AAGGGGTGGT GGACCCGGAC GATGAGGATG CCAAGCGGGT CCGCGTGAAG
ACCGATCTGA TCGAGGCGGA GATCAGCACG CAGGGTGGTG ACATCCGGCA GCTGGACCTG
CTCAAGCATC AGAAGGCCTC GGACGATCCA ACGCCCTACC GGCTGCTGCG CGACGAGGGC
GAGCCGTTGT TTGTCGCCCA GGCTGGACTC GGTGGCGACG GGCCTGCGCC GGGCCGGGAT
GCTCGTTACG AGGTGGATCA GGACGAGTTC GAACTGGCCG AGGGCGAGGA TACGCTCGAG
GTCCCGCTGA TCTGGGAGGA AGACGGCGTC AAGGTGCGCA AGGTCTACAC CTTCCGTCGC
GATAGCTATC TGGTCGACGT GCGCCACGAG GTGGAGAACA ACGCCGAGGA CGACTGGGCC
GGCTTCCAGT ACGTGCAGCT GCGGCGGCGC CCGGACCCGG CGGGGACAAC CCCGTGGTAC
ATCCACAGCT TCACCGGCGG CTCCCTCTAC ACGCAGGAGG ATCGCTTCAG CCGGATCTCG
TTCAGTGACA TGGAAGACTC CGATCTGTCG CAGGACGAGC GCGACGGCTG GGCGGCGATG
CTCCAGCACT ACTTTCTTGG GGTGATGATC CCGGAGCGGG GCGAGACCTA CCGGTACTAC
ACCCGGGCCC TGCCGCAGGA GACCTACCTC CTGGGGATGT CGTCGCCCTG GCTGCAGGTG
GCGGCCGGGG AGAGTGGTCA GAAGACCAAC CATCTGTTCG TTGGCCCCAA GGAGCAGGAC
CGACTCACGG CGGTGGGGTC GGCGCTGGAT GTCGATGACC TGCGGCTGAC GGTCGACTAC
GGGTTCCTGA CGATCCTCGC CAACCCCCTG TTCTGGGCGT TGGATCAGAT CGAAAACCTG
GTGAAGAACT GGGGCGTGGC GATCCTGATC CTCACGCTGC TGATCAAGAT CGCCTTCTAC
AAGCTGTCGG CGATCAGCTA TCGCTCGATG GCGAAGATGC GCAAGGTTCA GCCGAAGATG
CAGCAGATCC GGGAGCGCTA CTCGGATGAT CGGCAGCAGA TGAATCAGGC GCTGATGGAG
CTGTACAAGA AGGAGAAGAT CAATCCGCTC GGCGGCTGTC TGCCGATCCT GGTGCAGATC
CCGGTGTTCA TCGCCCTGTA CTGGGTGTTG GTGGAGAGCG TTGAGCTGCG CCATGCACCG
TTCATGCTGT GGATCCAGGA TCTGTCGAGC CGCGATCCGT ACTTCATCCT GCCGCTGCTG
ATGGGCGCGA GCATGTTGGT GCAGATGAAG CTGAACCCGC CGCCGATGGA TCCGATCCAG
AAGCGGGTGA TGCAGGTGCT GCCCTTCGTG TTCACGGGCT TCTTCATGCT GTTCCCGGCA
GGGCTGGTAC TCTACTGGCT GACCAACAAC ATCCTGTCGA TCGCACAGCA ATGGTACATA
CTGCGTCAGG TAGAGAAGTC CGACACGGCC TAG
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| Protein sequence | MENQRLILLI ALAGISLLLY FAWEREQMDP AEPVVEEQES EVDQEAPDAP SRAEEPDAGD
PMAEGVVDPD DEDAKRVRVK TDLIEAEIST QGGDIRQLDL LKHQKASDDP TPYRLLRDEG
EPLFVAQAGL GGDGPAPGRD ARYEVDQDEF ELAEGEDTLE VPLIWEEDGV KVRKVYTFRR
DSYLVDVRHE VENNAEDDWA GFQYVQLRRR PDPAGTTPWY IHSFTGGSLY TQEDRFSRIS
FSDMEDSDLS QDERDGWAAM LQHYFLGVMI PERGETYRYY TRALPQETYL LGMSSPWLQV
AAGESGQKTN HLFVGPKEQD RLTAVGSALD VDDLRLTVDY GFLTILANPL FWALDQIENL
VKNWGVAILI LTLLIKIAFY KLSAISYRSM AKMRKVQPKM QQIRERYSDD RQQMNQALME
LYKKEKINPL GGCLPILVQI PVFIALYWVL VESVELRHAP FMLWIQDLSS RDPYFILPLL
MGASMLVQMK LNPPPMDPIQ KRVMQVLPFV FTGFFMLFPA GLVLYWLTNN ILSIAQQWYI
LRQVEKSDTA
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