| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1199 |
|---|
| Symbol | |
|---|
| ID | 4710363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 1304016 |
|---|
| End bp | 1305272 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639855672 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_001002776 |
|---|
| Protein GI | 121997989 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0292186 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAC CCCCTGGCTT CGCCCGCTAC GCCGATCGCC TGTGGGCTGA AGCACTGCCC
CTGGACGAGC TCGCCGAACG TTTCGGCACC CCGTGCTACG TCTACTCCCG CGCCGCCATC
GAGGAGCGCT GGGCACTCTA CCGGAGCGCC CTCGGCGTCG CCGGGGACGT CTGCTACGCC
GTCAAGGCCA ACGGCAACCT CGCCCTGCTG CAACTGCTCG CCCGCCACGG AGCCGGATTC
GACATCGTCT CCGGCGGCGA GCTCGAACGC GTGCTGCACG CCGGCGGGGA CGCCGCGCGG
GTGGTCTTCT CGGGTGTTGG CAAAGGCACC GACGAGATCC GTCGCGCCCT GCAAGCCGGT
ATCCGCTGCT TCAACGTGGA GTCCGCTGCC GAACTCGAAC GCATCGCCAG CGTGGCCGCC
ACCGAGAACA CCCCGGCGCC GGTGGCCCTG CGCGTCAACC CCGACGTCAA CCCCGAGACC
CACCCCTACA TCGCCACCGG CCTGGCCCAG AGCAAATTCG GCATCGCCCT GGAGGAGGCC
GAGGCCCTCT ACCTCCAAGC GGCTAACGAT CCGCGCCTCG AGGTCCGTGG CATCGCCTGC
CACATCGGCT CGCAACTGCT CTCGGTGGCA CCGCTGACCG AGGCGGCAGA ACGGCTGGCG
GCGCTGGCCC GGCGACTGCA GGAGCAGGGC ATCTCCCTGG ACCACATCGA CGCCGGCGGT
GGCCTCGGCG TGCACTACAT CGATGAGCAG CCGCCAACCC CGGCCGAGCA CATCGAGGCG
ATCTCGGCGC CGCTGCGCGA CCTTGGCGTA TCCGTCCTGG TCGAGCCCGG GCGCGCCATT
GTTGCCGAGG CCGGCATCCT GCTCACCCGC ATCGAGTATC TCAAGCACAA CGGCGGCAAG
GAGTTCGCCA TCGTCGACGC CGGCATGAAC GACTACCTGC GCCCAGCGCT CTACGACGCC
GCCCACACCC TGGAGGCGGT CACCCCGTCG GAAGCCGAAC TTCGACCGGT GGACGTGGTC
GGACCGGTCT GCGAATCCGC CGACACCTTC GCCCGCGACT GCACGCTGCC GGCAGCCGCC
GGCGGCTTGC TGGCCATCCG TAGCGCCGGC GCCTACGGTG CCGTCATGGC CTCGCAGTAC
AACGCCCGGC CCCGACCGCC CGAGGTGCTG GTGGACGGCA CCCAGGCGCA CCTGATCCGC
CGGCGCGAGA CCATCGACGA GCTGATGAGC GGGGAATCGC TCCTGCCGGA GGGCTGA
|
|---|
| Protein sequence | MSTPPGFARY ADRLWAEALP LDELAERFGT PCYVYSRAAI EERWALYRSA LGVAGDVCYA
VKANGNLALL QLLARHGAGF DIVSGGELER VLHAGGDAAR VVFSGVGKGT DEIRRALQAG
IRCFNVESAA ELERIASVAA TENTPAPVAL RVNPDVNPET HPYIATGLAQ SKFGIALEEA
EALYLQAAND PRLEVRGIAC HIGSQLLSVA PLTEAAERLA ALARRLQEQG ISLDHIDAGG
GLGVHYIDEQ PPTPAEHIEA ISAPLRDLGV SVLVEPGRAI VAEAGILLTR IEYLKHNGGK
EFAIVDAGMN DYLRPALYDA AHTLEAVTPS EAELRPVDVV GPVCESADTF ARDCTLPAAA
GGLLAIRSAG AYGAVMASQY NARPRPPEVL VDGTQAHLIR RRETIDELMS GESLLPEG
|
|---|
| |