Gene Hhal_1140 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_1140 
Symbol 
ID4710124 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp1238775 
End bp1240973 
Gene Length2199 bp 
Protein Length732 aa 
Translation table11 
GC content70% 
IMG OID639855613 
ProductAsmA family protein 
Protein accessionYP_001002718 
Protein GI121997931 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2982] Uncharacterized protein involved in outer membrane biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.999799 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCCGGA TACTCAAGTG GCTCCTTTTC GCCGTGGTCG GGCTGTTCGC CCTGCTGGTG 
GTGGCAGCGA CGCTGGTCAG CGTGGTCTTC GACCCCAACG ACTATCGCGA CGACATCGCG
GCGGCCGTCG AAGCGGAAAC CGGGCGCGAG TTGACCATCG AAGGGGACAT CCGACTCTCC
TTCTTCCCCT GGCTGGGCCT GGAGGTGGGG CGCGTCACCC TCGCCGACCG GGAAGGATTC
CATGAGGACC CCTTCCTCGA GGTGGAGCAG GCCGACGCGG CCGTCCGACT TTTGCCGCTG
CTCTGGGGCC AGCTGGAGAC CCGGCTGTTA AGCATCGAGG CGCCCGTCGC CCGCCTGATG
GTCAACGAAG AGGGCGAGGG GAACTGGGAG GACCTGGTGG CGCGCCTCGT CGATGACGAA
GCCCCGCCGG CTGACCCCGA GGAGGAGGCA CCGGCGGGCG AGCTGCCGCC CATGCTTCGC
GACGCCGCCT TCGGCGGGCT GCAGGTCCGC CGCGGTCAGC TGCTCTGGGA AGACCGCAGC
ATCGATGACC GCAAGGAGGT CGAGCGCTTC GACCTGGATG TCGAGGCACT GCGACTGGGC
CAGCCGGTGG CCCTGCAGGC CAGCTGGCTC GGCCACGGCG CCGAGCTGCC CAGGATCGAC
GGACAGCTGC GCCTGCAGGC CACCCTGGAC CAGGCCATGG AACAGCTCGA CCTGGACGGG
CTGGAGATGC TGGTGGACGC TCAGGGGGAC CAGGTGCCGG GTCGGCAGCA GCGCCTGGGC
GTGACCGGCA ACGGCCGTAT CGGCCTGGGC GCCCCCCTGC GGATCGAGTG GCCGGAGCTG
GAAGTCACCG GGGCGGGGAT CGCCCTGGAG GCAGCGGCCG ATCTGGAGCT GGACGGCACC
GGGGCCCACG GTCAGCTCGA CTGGCAACTG CCGGCGTTCA ACCTGCGCAC CGCCCTCAGC
CGGCTGGACA TCGGCCTGCC CACCCCGGCG GACCCCACGG CAATGACCCG CGTGGGCGGT
GCCGGCCTCA TCGAGTTCGA CGGCCAGCGT CTGCTCCTGC CCGAATTCGG TCTGGACCTC
GATGACACGC GGATCGACCT CGATGGCGGG GTGGACGACT GGACCGGCCC CGAGGTCACG
CTCAATCTGA CCGTGGACGA GATCAACCTG GACCGGTACC TGCCCGCCGA GGAACGGCGC
GCCGTCGACG AGCCGACGGC ACCCGACGCG GGGCTGCCGG ACCTGGAAGA GATCGCCCTC
GATCTGCCGC TGGAGCCGCT GCGCACCCTG GAGCTCGACG GCGGGCTGCA GATCGGCCAG
CTGATCCTCT CCGGGCTCTC CCTGCAGGAG GTCCGGGGCG ACTTCAGCGG CAGCGACGGC
CGTGTGGGCA TCGCCGACCT CGAGGCCCGG CTCTATGATG GCGACTACCG CGCCGACACC
TTCCTCGACG CACGCGGCGA CTATCCGTAC TTCGAACTCG ACCACCGCCT GGACCAGGTG
CAGTTCGCGC CGCTGCTCGA GGATCTCCTC GAACGGGACT GGCTCCACGG GCGGGGCAGC
TTCGCCCTGC AGGGCGAGGG CGGCGGCGAG AACCTTGAAC AGCTGATCGA GGACTTCCGC
GGCGATGCCG AGCTCAATGT CACCGAGGGG GCCGTACTGG GGCTGAACAT CCCGCACATG
TTCCGCGAGG GTGTAGCCCG CGTCCGCGCC CAGCCCCGGC CCGAACCGCC GGAGGACGAG
GCACGCACGG ATTTCGGCTC CCTCTCGGCC AGTTTCGAGC TGCGCGACGG CGAGATCCAC
AACGACAACC TGCGCGCCGA ATCGCCGATC CTTCGCGCCC GTGGCGCCGG TCACGCCAAC
CTGCTCAGGG AGACCATCGA CTACCGCGTA CGCCTATCGG TGATCGACAA CCTGGAGGAC
GCCGACGGCC GCCCGATCCG CGAACTCAAG GACGTCACCG TGCCCCTGGA GTTCAGCGGA
GACCTGTTCA GCCCACGCAT CCGCTTCGAC CTCCGCGCTG CGCTGACCGA GCAGGAGATC
CGGCGTCTGC GCGAGGCCCA GCAGCGCCTC GACGAGGCCG AGGAGAAGAT CCGCGAGGGC
TTCCGGGAGC GCATTGAACA GGAGCTCGAG GAGCAGACCG ACCGCGCCGA GGAGCGCATC
CGTCAGGAGG CGGACAGCAT CCTGCGGCGG CTTCGCTGA
 
Protein sequence
MLRILKWLLF AVVGLFALLV VAATLVSVVF DPNDYRDDIA AAVEAETGRE LTIEGDIRLS 
FFPWLGLEVG RVTLADREGF HEDPFLEVEQ ADAAVRLLPL LWGQLETRLL SIEAPVARLM
VNEEGEGNWE DLVARLVDDE APPADPEEEA PAGELPPMLR DAAFGGLQVR RGQLLWEDRS
IDDRKEVERF DLDVEALRLG QPVALQASWL GHGAELPRID GQLRLQATLD QAMEQLDLDG
LEMLVDAQGD QVPGRQQRLG VTGNGRIGLG APLRIEWPEL EVTGAGIALE AAADLELDGT
GAHGQLDWQL PAFNLRTALS RLDIGLPTPA DPTAMTRVGG AGLIEFDGQR LLLPEFGLDL
DDTRIDLDGG VDDWTGPEVT LNLTVDEINL DRYLPAEERR AVDEPTAPDA GLPDLEEIAL
DLPLEPLRTL ELDGGLQIGQ LILSGLSLQE VRGDFSGSDG RVGIADLEAR LYDGDYRADT
FLDARGDYPY FELDHRLDQV QFAPLLEDLL ERDWLHGRGS FALQGEGGGE NLEQLIEDFR
GDAELNVTEG AVLGLNIPHM FREGVARVRA QPRPEPPEDE ARTDFGSLSA SFELRDGEIH
NDNLRAESPI LRARGAGHAN LLRETIDYRV RLSVIDNLED ADGRPIRELK DVTVPLEFSG
DLFSPRIRFD LRAALTEQEI RRLREAQQRL DEAEEKIREG FRERIEQELE EQTDRAEERI
RQEADSILRR LR