Gene Hhal_1103 details

Gene Information

• Locus tag: Hhal_1103
• ID: 4709963
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 1195530
• End bp: 1197551
• Gene Length: 2022 bp
• Protein Length: 673 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 639855575
• Product: radical SAM domain-containing protein
• Protein accession: YP_001002681
• Protein GI: 121997894
• COG category: [C] Energy production and conversion
• COG ID: [COG1032] Fe-S oxidoreductase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.204136
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGACGACT CGAAGACCCC CTCGCTATTC TCCTACCGCC CTTACTGGGC GGCCCGCTTC 
GGCGTGGCCC CGTTTCTGCC CATGTCCCGG CGCGAGATGG GCGAACTTGG CTGGGACAGC 
TGCGACGTCA TCCTGGTCAC CGGCGACGCC TACGTCGACC ACCCGAGCTT CGGGATGGCG 
ATCATCGGCC GCCTGCTCGA GGCGCAGGGC TTTCGCGTCG GCATCATCGC CCAGCCCGAC 
TGGCGCAACA CCAGCGACTT CCAGGCCCTG GGGGCCCCGA ACCTGTTCTT CGGCGTCACC 
GCCGGCAACA TGGACTCCAT GGTTAACCGG TATACCGCCG ATGGCCGGCG CCGCAGCAAC 
GACGCCTACA GCCCCGACGA TGAGGGCGGC CGCCGGCCCG ACCGCGCCAC CATTGTCTAC 
AGCCAGCGCC TGCGCGAGGC CTACCGCGAC ACCCCCATCC TGCTCGGCGG CATCGAGGCC 
AGTCTGCGCC GCCTGGCCCA CTACGACTAC TGGTCCGACA AGGTCCGCCG TTCGGTGCTG 
CTCGACGCCA AGGCCGATCT GCTGCTCTAC GGCAACGCCG AGCGCGCCCT GGTGGAGGCC 
GCCCACCGCA TCGCCGGCGG CGAGCCGGCC CGAGAGATCC ACGACGTGCG GGGCATCGCC 
TACGCCCGCA CGGCCCCGGG CGCCGACGAA CCGGATCCGG CCCGGGCCGA AGGTGTGCTG 
CGGGTCCCGG ACTGGGAGCA GGTACGCCAG GATGCGGACC GGTTTGCCGA GCTGGCACGC 
ATCACCCGCC AGGAGACCAA TCCGCACAAC GCCCGCACCC TGGTCCAGGC CCACGGTGCC 
CAGGAGGTGT GGATCACCCC GCCGCCGTTG CCCCTGAGCA CCGAGGAGCT GGACGCCCTC 
TACGAGCTGC CCTACGCCCG GGCGCCCCAC CCGGCCTACG CCGGGCGCCC CATCCCCGCC 
TGGGAGATGA TCCGCTTCTC GGTGAACATC ATGCGCGGGT GCTTCGGCGG CTGCAGCTTC 
TGCTCCATCA CCGAGCACGA GGGGCGCCTG ATCCAGTCAC GCTCCCAGGA ATCGGTGCTG 
CGTGAGATCG ACGAGATCGC CGAGCGCACC GAGGGCTTTA CCGGGGTGAT CTCGGACCTC 
GGGGGACCCA GCGCCAACAT GTACCGCATG GGCTGCAAGG ACCCGAAGGC CGAGGCCCAC 
TGCCGGCGCA TGTCGTGCCT CTACCCGCGC GTCTGCCGCA ATCTCGATAC CGACCACGAG 
CCACTGATCA ACCTTTACCG GCAGGCCCGT CAGCGGCCCG CGGTGAAGAA GGTGCTGGTG 
GCCTCCGGTG TACGCTACGA CCTGGCCATC CACTCCAAGG CGTACGTGCG GGAGCTGGTC 
AGCCACCACG TCGGCGGGTA CCTGAAGATC GCCCCGGAGC ACACGGAGCC CGGGCCACTG 
GCGCAGATGC TCAAACCGGG CATGGACACC TACGAGCGCT TCAAGGCGCT GTTCGAGGAC 
TACAGCCGGC GAGCGGGCAA GGAGCAGTAC CTGATCCCGT ATTTCATCGC CGCGCATCCG 
GGCACCACCG ACGAGGACAT GCTCGAACTG GCGTTGTGGC TCAAGCGCAA CGGCTTTCGG 
CCCAACCAGG TCCAGGCCTT CCTGCCCACG CCCATGGCCC TGGCCACCGC CATGTATCAC 
AGCGGCCGCG ACCCGCTGCG GCCCGTGGGG TCGGACGGCG GCACGCCGGT GCGCACCGCG 
CGAGGTCTGC GCACGCGCCG GCTCCACAAG GCCTTCCTCC GTTACCACGA TCCGGAGAAC 
TGGCCGCTGC TGCGCCGGGC GCTGCAGCGG ATGGGGCGCG AGGATCTGAT CGGCAACAGC 
AAGCGCCACC TCATCCCCGC CCACCAGCCG CCGGGCACAG GGACCTCCGG CGAGGGGCGG 
CGGACCCCGG ACGGCAAGCG CCGCCAGGGG CAGAAACCCC CGACGGCCGA CAACCGGCCC 
CGGCGCGGCC CGCGCCGGCC GCGGGGCAAG GCCCGGCGCT GA 

 

Protein sequence

MDDSKTPSLF SYRPYWAARF GVAPFLPMSR REMGELGWDS CDVILVTGDA YVDHPSFGMA 
IIGRLLEAQG FRVGIIAQPD WRNTSDFQAL GAPNLFFGVT AGNMDSMVNR YTADGRRRSN 
DAYSPDDEGG RRPDRATIVY SQRLREAYRD TPILLGGIEA SLRRLAHYDY WSDKVRRSVL 
LDAKADLLLY GNAERALVEA AHRIAGGEPA REIHDVRGIA YARTAPGADE PDPARAEGVL 
RVPDWEQVRQ DADRFAELAR ITRQETNPHN ARTLVQAHGA QEVWITPPPL PLSTEELDAL 
YELPYARAPH PAYAGRPIPA WEMIRFSVNI MRGCFGGCSF CSITEHEGRL IQSRSQESVL 
REIDEIAERT EGFTGVISDL GGPSANMYRM GCKDPKAEAH CRRMSCLYPR VCRNLDTDHE 
PLINLYRQAR QRPAVKKVLV ASGVRYDLAI HSKAYVRELV SHHVGGYLKI APEHTEPGPL 
AQMLKPGMDT YERFKALFED YSRRAGKEQY LIPYFIAAHP GTTDEDMLEL ALWLKRNGFR 
PNQVQAFLPT PMALATAMYH SGRDPLRPVG SDGGTPVRTA RGLRTRRLHK AFLRYHDPEN 
WPLLRRALQR MGREDLIGNS KRHLIPAHQP PGTGTSGEGR RTPDGKRRQG QKPPTADNRP 
RRGPRRPRGK ARR