Gene Hhal_1078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_1078 
Symbol 
ID4709870 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand+ 
Start bp1172807 
End bp1173826 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content71% 
IMG OID639855549 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001002656 
Protein GI121997869 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.102622 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTCGC ACGCACCCAT GGCGCAACCG ACCGTCGGCG CCGACGAGGC CCTGCTCCGG 
GTCGACGGCC TCTACACCCA CTTCGAGCTG CGTCAGTGGG GCTTCCTGCG TACCGGCACG 
GTACACGCCG TCGACGGCGT CACCTTCACC CTGGACGCCG GGGAGGCCGT CGCTGTGGTG 
GGCGAGAGCG GCTGCGGCAA GAGTTCGCTG GCGCGCACCC TGCTCGCTCT CCACCGGCCC 
ACCGCGGGCT CGGTGCGTTT TGCCGGTACC GAGCTGGGTG CGCTCAACGG CGCGGCCCTC 
AAGGCGTACC GGGCCCAGGT CGGCTATGTC CAACAGGATC CCTACGGGGC CCTGCCACCG 
TTCATGGAGG TGAAGCGGAT TCTAGCCGAG CCGCTGATCA TCCACGGCGT TCGCCCGCGG 
GCCGAGCGCT GGCGGCGGAT CAAGGCGGCC CTGGAGGAGG TCGGCCTGAC ACCGGCGGCC 
GACGTTGCCG CGAAGTTTCC CCACCAGCTC AGCGGCGGGC AGCAGCAGCG TGTGGTCATC 
GCCCGCGCCC TGCTGCTGCG CCCGGCGATG ATCATCGCCG ACGAGCCCGT CTCCATGCTC 
GACGCTTCGG TGCGGGTGGA GATCCTCAAC CTGCTCCATC GCATCCAGCA GGAGCACCGG 
CTGGCCCTGC TCTACATCAC CCACGACCTC TCCACGGTCC GCCACTACGT GGACCGAGCC 
ATGGTGATGT ACGGCGGACG GATCATCGAA CAGGCGCCGG TGGGCGCGCT GCTCCAGCGC 
CCGCAGCACC CGTATACCGA GGCCCTGCTC AGCGCGCTCG GGGATCCCGA CGCCGCTAAC 
GCCGGACGGC CGCGCCCGGT CCCCGGGGGC GAGGCCCCGA GCCTGATCCA GCCACCCTCC 
GGCTGCCGCT ACCATCCACG CTGTCCGTAC GCCATGGTCA ACCGCTGCGA GCTGGACCCG 
CCGCCCCCGG ACTTCCGGCC CCACCCGGAG CACCGCGCCG CCTGCTGGCT GCGCGAGTAG
 
Protein sequence
MSSHAPMAQP TVGADEALLR VDGLYTHFEL RQWGFLRTGT VHAVDGVTFT LDAGEAVAVV 
GESGCGKSSL ARTLLALHRP TAGSVRFAGT ELGALNGAAL KAYRAQVGYV QQDPYGALPP 
FMEVKRILAE PLIIHGVRPR AERWRRIKAA LEEVGLTPAA DVAAKFPHQL SGGQQQRVVI 
ARALLLRPAM IIADEPVSML DASVRVEILN LLHRIQQEHR LALLYITHDL STVRHYVDRA 
MVMYGGRIIE QAPVGALLQR PQHPYTEALL SALGDPDAAN AGRPRPVPGG EAPSLIQPPS 
GCRYHPRCPY AMVNRCELDP PPPDFRPHPE HRAACWLRE