| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1070 |
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| Symbol | prpD |
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| ID | 4709860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1161940 |
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| End bp | 1163385 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639855541 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_001002648 |
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| Protein GI | 121997861 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.327536 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGGAG ACATCCGCAG CGCCCAGCGC CCCGACCCCG ATGCCGAGCT GGTGGCCATC
GCCGACTACG TCAGCGGGAC CGCCATCGAC TCCGCCGAGG CCTACCAGAC CGCCCGCCAC
TGCCTGATGG ACAGCCTCGC CTGCGCCATG ATGGCGCTCG ACTACCCGGC CTGTACCAAA
CTGCTCGGCC CCATCGTCCC GGGGGCCGAG ATGCGCGACG GGGTGGTGGT GCCGGGCACC
GCCCATCGGC TCGATCCCGT GCAGGGGGCG TTCAATATCG GCGCGCTGAT CCGCTGGCTG
GACTTCAACG ATACCTGGCT GGCGGCGGAG TGGGGCCACC CTTCGGATAA CCTCGGTGGC
ATCCTGGCGG CGGCCGATTA CGAGAGCCGT CGGCGCCTGG CGCTGGGTCA GACACCGCTG
ACCATGCGCG AGGTGCTGAC TGCGGCCATC AAGGCCCACG AGATCCAGGG CGTGCTGGCG
CTGGAGAACA GCTTCAACCG TGTCGGCCTC GACCACGTCC TCCTGGTGCG ACTGGCGACC
ACCGCGGTGG CCACGCAGCT GCTCGGCGGC AGCCGCGAGG ACATCATCAA CGCCGTCTCC
AACGCCTGGA TCGACGGCGG CGCCCTGCGG ACCTATCGCC ACGCCCCGAA CACCGGCTCG
CGCAAGAGCT GGGCCGCCGG GGACGCCTCG GCCCGCGGGG TCCGGCTGGC GCTGATGAGC
CTCACCGGCG AGATGGGCTA CCCGTCGGCA CTCACCGCCC AGGGGTGGGG CTTCCAGGAC
GTGCTCTTCC GCGGGGAACC GATCCGCCGC TCCCAGGCGT ACGCCAGTTA CGTCATGGAG
CACGTGCTGT TCAAGATCTC CTTCCCCGCC GAGTTCCACG CTCAGACCGC GGTGGAGGCG
GCCCTGCAGC TGCACGCCGA GGTGGCGCCT CGACTCGACG AGGTCGACCG GGTGGTCATC
GAGACCCAGG AGGCGGGGGT GCGGATCATC GACAAGACCG GCCCGCTGAA CAATCCTGCC
GACCGCGACC ACTGTCTCCA GTACATGGTG GCGGTGCCGC TGATCTTCGG CCGCCTGACC
GCCGCCGACT ACGAGGATGC GGTGGCGGCC GACCCGCGTA TCGACGCCCT GCGCGAGCGC
ATGGAGGTCT CCGAGAACGA GGCCTTCTCC CGGGACTACA TGGACCCGGA GAAGCGCTCC
ATCGGGAACG CCGTGCAGGT CTTCTTCAAG GATGGCTCCA AGACCGAGCG CATCGCCGTG
GAGTACCCCA TCGGCCACCG GCGTCGCCGT GACGAGGGGA TCCCGGTGCT GGAGGAGAAG
TTCCGCAACG CCCTGGCGGC GCGGTTCGCC CCGCGGCAGG CTGGCGCCAT CGAGGCGGCA
CTGTCCGACC AGGCGGGTCT GGAACAGATG CCGGTCCACG CCTTTATGGA TCTGTGGCGG
GCCTGA
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| Protein sequence | MSGDIRSAQR PDPDAELVAI ADYVSGTAID SAEAYQTARH CLMDSLACAM MALDYPACTK
LLGPIVPGAE MRDGVVVPGT AHRLDPVQGA FNIGALIRWL DFNDTWLAAE WGHPSDNLGG
ILAAADYESR RRLALGQTPL TMREVLTAAI KAHEIQGVLA LENSFNRVGL DHVLLVRLAT
TAVATQLLGG SREDIINAVS NAWIDGGALR TYRHAPNTGS RKSWAAGDAS ARGVRLALMS
LTGEMGYPSA LTAQGWGFQD VLFRGEPIRR SQAYASYVME HVLFKISFPA EFHAQTAVEA
ALQLHAEVAP RLDEVDRVVI ETQEAGVRII DKTGPLNNPA DRDHCLQYMV AVPLIFGRLT
AADYEDAVAA DPRIDALRER MEVSENEAFS RDYMDPEKRS IGNAVQVFFK DGSKTERIAV
EYPIGHRRRR DEGIPVLEEK FRNALAARFA PRQAGAIEAA LSDQAGLEQM PVHAFMDLWR
A
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