| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1047 |
|---|
| Symbol | |
|---|
| ID | 4709803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 1133092 |
|---|
| End bp | 1134048 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639855518 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001002625 |
|---|
| Protein GI | 121997838 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00687136 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCA CACTACGGCA GCTACAGGTG TTCGAGTCTG TAGCCCGACA CCTCAGTTTC
ACGCGCGCCG CCGAGGAGCT CTATCTCACG CAACCGGCGG TCTCCATGCA GATCAAACAG
CTCGAGCAAC AGGTCGGGCT GCCACTGTTC GAGCAGATCG GTAAACGAAT CTACCTCACC
GAGGCGGGGG AGGAGGTGCG GCGCTATGCT CAACGCATCT CCGCCGAGCT GCGCGAGCTT
GCCGACGGCC TCGAGGCCCT GCGCGGGCTC AACAGCGGGC GCCTGCGGCT GACGGTGGCC
TCGACCGCCA ACTACTTCGC CACCGATCTG CTCGCCGCCT TCACCCGGCG CCAGCCGGGC
GTGACCTTCC AGCTGGAGGT CACCAACCGG GAGGGAGTCA TCCGCCGCAT CCAAGACAAC
GAAATGGATC TGGCCGTCAT GGGCCGCCCC CCCGAGGGGC TGGACGTCGC CGCCGAGGCC
TTCATGCCCA ACCCGCTGGT GATCATCGCC GCGCCAGACC ACCCGCTGGC CGACGGTTCA
CCGATTCCGC TCGAGCGCCT GCAGGACGAA CTCTTCGTGC TCCGCGAGCA GGGTTCGGGC
ACCCGCAACG CCGTACAGCG CGTGCTCGAG GAGCGCGGCA TGAACCTGCG CGGCGGGCTG
GAGATGAGCT CCAACGAGGC CATCAAACAG TCGGTACAGG CCGGACTCGG CCTCGGCGTC
GTCTCGATCC ACACGGTGGC CCTGGAGCTG GAGCTGGGCC GCCTACGCGT GCTCAACGTG
GAGGGCTTCC CCCTGGAGCG GCAGTGGTAC CTGGTACACC GCTCGGGCAA GCGCCTGTCG
CCGGCCGCCG AGGCATTCCG CCAGTTCATC CTCGACGAGG CCCACCGGCA CTGGCAGGTC
CCCGAGACCC CGGGCGTCGC GCCCCCGCAG GAACCACCGC TGCAGGCCGT TCCGTGA
|
|---|
| Protein sequence | MNITLRQLQV FESVARHLSF TRAAEELYLT QPAVSMQIKQ LEQQVGLPLF EQIGKRIYLT
EAGEEVRRYA QRISAELREL ADGLEALRGL NSGRLRLTVA STANYFATDL LAAFTRRQPG
VTFQLEVTNR EGVIRRIQDN EMDLAVMGRP PEGLDVAAEA FMPNPLVIIA APDHPLADGS
PIPLERLQDE LFVLREQGSG TRNAVQRVLE ERGMNLRGGL EMSSNEAIKQ SVQAGLGLGV
VSIHTVALEL ELGRLRVLNV EGFPLERQWY LVHRSGKRLS PAAEAFRQFI LDEAHRHWQV
PETPGVAPPQ EPPLQAVP
|
|---|
| |