Gene Hhal_0983 details

Gene Information

• Locus tag: Hhal_0983
• ID: 4709539
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: -
• Start bp: 1055088
• End bp: 1056962
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 639855452
• Product: deoxyxylulose-5-phosphate synthase
• Protein accession: YP_001002561
• Protein GI: 121997774
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.288267
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCATGG GAACGCACGA CGAGGACAAG GTATTGCTGT CGGCCATCGA CGATCCGGAG 
GATCTGCGGC GCCTGCCGCT GGAGCGATTG CCGGCCGTGG CCCAGGAGAT GCGCGACTAT 
CTGGTCGAGA GCGTCTCGCA GAGCGGGGGG CACCTCGCTG CCGGGCTCGG GGCCGTGGAG 
CTGACCCTGG CGCTGCACTA CGCCCTGGAT ACCCCCCGCG ATCGGCTCGT ATGGGACGTT 
GGCCACCAGT GCTACGCCCA CAAGGTCCTG ACCGGCCGGC GCAGCCAGCT GCCCCGCATC 
CGCCAGGCCG GCGGTCCCGC CGGTTTCCCC GTACGCGACG AGAGTCCCTA CGACGCCTTC 
GGGGTCGGCC ACTCCTCGAC GAGCATCAGC GCCGCCCTAG GCATGGCGCT GGCCGAGCGC 
GCCGGCGGCG AACACCGGCG GTGCGCCGCG ATCATCGGCG ACGGTGGGCT CAGCGCCGGC 
GAGGCACTGG AGGCACTCAA CCACGCCGGC GACGTGAAGG CCGATCTGCT GGTGGTGCTC 
AACGACAACG AGATGTCCAT CTCGGAGAAC GTCGGCGCCC TTTCCAACTA CCTGACCCGG 
TTGCTCTCCG AGCCGTTGGC GGGGCAGTTG CGCCGCGGTG CCCGGGACAT GCTCCGCTAT 
CTGCCGCCGA TTCACGAGTT GGCCCGGCGC ACCGAAGGCC ATGTGAAGGG GCTGCTGGCT 
CCGGCCACGC TCTTCGAGGA ACTGGGCTTC CACTACTTCG GCCCGGTGGA CGGGCACAAC 
GTCGAGGGGC TGGTACGCGT CCTGCGCAAC CTCCGTGATC AGCCCGGTCC GCGGCTGCTC 
CACGTGGTTA CCCGCAAGGG CAAGGGGTAC GCCCCGGCCG AGGAAGACCC CATCTCCTAC 
CACGGGGTGA GCTGCTTCGA CCCGGCCCGC GGGCTCACCA AGGGCACACC GGCCAAGCTC 
AACTACACCG ATGTCTTCAG TCGCTGGATC TGCCGGGCTG CCTGCACCGA CGAGCGGGTG 
GTGGCCATCA CTCCGGCGAT GCGCGAGGGC TCGGGACTGG TGGAGTACGC CCGGCGCTTC 
CCCGAACGCT TCTTCGATGT CGGCATCGCC GAGCAGCACG CTGTCACCCT GGCTGCCGGG 
CTGGCCTGCG AGGGCGCGCG CCCGGTGGTG GCTATCTACT CCACCTTCCT GCAGCGTGGT 
TACGACCAGG TCATCCACGA CGTCGCCCTG CAGCGCCTGC CGGTGCTCTT CGCCGTGGAT 
CGGGCGGGCA TCGTCGGCGC CGATGGGGCC ACCCACCAGG GCACCTACGA CCTCAGCTAC 
CTGCGCTGCA TCCCGGATCT CACCGTCATG GCCCCGGCCG ACGAGGCGGA GTGCTGGCGG 
ATGCTCGCCA CGGGGCTGGT GCTCGAGGGC GCCTCGGCGG TGCGCTACCC GCGCGGGACC 
GGTCCCGGCG AGGCCCTGCC CGACGACATG GAACCCCTGC CTGTGGGACA GGCCGAGGTG 
CGCCGAGAGG GCGGCAGTGG GGTGGCCCTG CTCGCCTTCG GTGCCCTGCT CCCGGTGGCC 
GAGGCCGTTG GCGAAGAGCT TGACGCCACG GTGGTGAACA TGCGCTTCGT CAAGCCGCTG 
GATGAGGCCC TGCTGCGCCG GCTGGCCGGC GAGTGTCGCC ACCTGGTGAC GCTGGAGGAG 
AACGTCATCG CCGGCGGCGC CGGCAGCGGT GTTGCCGAGT ACCTGTCCAG CATCGGCGTG 
CATACCCCGA TCACCCACCT GGGGCTGCCG GACGCCCCTG TGCACCACGG GGCGCGCAAT 
GACATCCTGG CCGAGCATGG CCTGGACCGG GACGGGGTGC GCCGGACCGT GCAGGGTCTC 
CTGCAGCAGT CGTAG 

 

Protein sequence

MTMGTHDEDK VLLSAIDDPE DLRRLPLERL PAVAQEMRDY LVESVSQSGG HLAAGLGAVE 
LTLALHYALD TPRDRLVWDV GHQCYAHKVL TGRRSQLPRI RQAGGPAGFP VRDESPYDAF 
GVGHSSTSIS AALGMALAER AGGEHRRCAA IIGDGGLSAG EALEALNHAG DVKADLLVVL 
NDNEMSISEN VGALSNYLTR LLSEPLAGQL RRGARDMLRY LPPIHELARR TEGHVKGLLA 
PATLFEELGF HYFGPVDGHN VEGLVRVLRN LRDQPGPRLL HVVTRKGKGY APAEEDPISY 
HGVSCFDPAR GLTKGTPAKL NYTDVFSRWI CRAACTDERV VAITPAMREG SGLVEYARRF 
PERFFDVGIA EQHAVTLAAG LACEGARPVV AIYSTFLQRG YDQVIHDVAL QRLPVLFAVD 
RAGIVGADGA THQGTYDLSY LRCIPDLTVM APADEAECWR MLATGLVLEG ASAVRYPRGT 
GPGEALPDDM EPLPVGQAEV RREGGSGVAL LAFGALLPVA EAVGEELDAT VVNMRFVKPL 
DEALLRRLAG ECRHLVTLEE NVIAGGAGSG VAEYLSSIGV HTPITHLGLP DAPVHHGARN 
DILAEHGLDR DGVRRTVQGL LQQS